>PF03843 (151 residues) LTGCATTVPQAIREPPPNDPVVAEVRRDPAAYAGQRVRWGGTVASVENRRDETRLEIVAR ELGSNGRPRETDRSQGRFIARVQGFLDPAVYTSGRQVTVSGTLEQTVTRPIGQYSYTFPL VRADSVYLWERMPDRRNYYYYDPFWPYDPFW |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LTGCATTVPQAIREPPPNDPVVAEVRRDPAAYAGQRVRWGGTVASVENRRDETRLEIVARELGSNGRPRETDRSQGRFIARVQGFLDPAVYTSGRQVTVSGTLEQTVTRPIGQYSYTFPLVRADSVYLWERMPDRRNYYYYDPFWPYDPFW | |||||||||||||||||||
1 | 3ebeC | 0.06 | 0.05 | 0.84 | 1.00 | DEthreader | QQYHVEKSMERKMNGRKLIRQLQNKIAT-EKLEEEDWVTFGVIKKITPF----SIWRL-N-------DLKDLDKYISLFLFGDVKEHWK-TDQGTVIGLL-NAN-PM--G---TDEVCLSVDNQKVLLMGDAVDLNCEYVQKKVSKRA--- | |||||||||||||
2 | 3ja84 | 0.11 | 0.09 | 0.77 | 1.00 | DEthreader | --------LDPYN-VG-SCKGMREL--N-PNDIDKLINLKGLVLRSTVIPDKQVIKLQETPDF---------QTPHSISLCVYDELVD-SCRAGDRIEVTGTFRSIPI--------YKTYVDVVHVKVSDRLD-IAPSIHLTN-LYLEDK- | |||||||||||||
3 | 4joiD | 0.17 | 0.11 | 0.64 | 0.39 | HHpred | ------------LPKPGTYYLPWEVSAG-QVPDGSTLRTFGRLCLYDMIQSRVTLMAQH-------------GSDQHQVLVCTKLVEPFHAQVGSLYIVLGELQHQQD--------RGSVVKARVLTCVE--------------------- | |||||||||||||
4 | 1l0wA1 | 0.12 | 0.07 | 0.62 | 0.74 | DisCoVER | -------MR--R---TH-YA-GS-LR--ET-HVGEEVVLEGWVNRRRDLGGLIFLDLRD--------R------EGLVQLVAHPYA-ER-VRPEWVVRAKGLVRLREPNPL---ATGRVEVELSALEVLA--------------------- | |||||||||||||
5 | 1b8aA1 | 0.20 | 0.12 | 0.60 | 0.32 | MRFsearch | ---------------------THYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDR--------------DGIVQITAPKKVDPELFKSEDVVAVEGVVNFTPKA------KLGFEILPEKIVVLNR-------------------- | |||||||||||||
6 | 1l0wA1 | 0.11 | 0.07 | 0.65 | 0.96 | SPARKS-K | ---------------MRRTHYAGSL---RETHVGEEVVLEGWVNRRRDLGGLIFLDLRDR--------------EGLVQLVAPAYATAERVRPEWVVRAKGLVRLR-PEPNPRLATGRVEVELSALEVLAE-------------------- | |||||||||||||
7 | 4j15A1 | 0.13 | 0.09 | 0.73 | 0.79 | MAPalign | ---YAKERYGISSMIDRVLVRVRDLT--I-QKADEVVWVRARVHTSRAKGKQCFLVLRQ--------------QQFNVQALVAVVKFAANINKESIVDVEGVVRKVQKIGS--CTQQDVELHVQKIYVISLA------------------- | |||||||||||||
8 | 1ltlE2 | 0.17 | 0.11 | 0.66 | 0.61 | CEthreader | -----------------NVIPLRELR---SKFIGKFVAVDGIVRKTDEFLDTQTLKLQEPLEN-----LSGGEQPRQITVVLEDDL-VDTLTPGDIVRVTGTLRTVRDERTKR---FKNFIYGNYTEFL---------------------- | |||||||||||||
9 | 1wydB1 | 0.18 | 0.11 | 0.62 | 0.61 | MUSTER | ---------------MYRSHFIADVT---PEYDGKEVIWAGWVHLLRDLGGKKFIILRD--------------KTGLGQVVVDKFGISQELTQESVIQVRGIVKADKRAP-RG-----IELHAEEITL-KAK------------------- | |||||||||||||
10 | 1lm0A | 0.20 | 0.12 | 0.61 | 0.91 | HHsearch | -------------SNLNLFYTPSEIVNGKTDEAGQRIRVGGMVTVMVRDPNHVQFAVH----DS---------LGGEILVTYDD-LLPDLFREGQGIVAQGVLGED--G----------KLAATEVLA--KHD------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |