>PF03708 (246 residues) LNVSMWDEPHELQLLGSQSLPNITNIAQISGITGGCVGFRPQGVPWYLGWSRQEATRFLL RHPSFSKSTEPFTVVTADRHNLFMGSEYCGAYGYRFWNMYNCSQVGRQYRCGNARSPRPG LPEIQCTRRGGKWVNQSQEINESEPFSFTVNCTASSLGNASGCCGKAGTILPGKWVDSTQ GSFTKPKALPPAIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPKHTDILKVLVNSSRTG IRRKRS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | LNVSMWDEPHELQLLGSQSLPNITNIAQISGITGGCVGFRPQGVPWYLGWSRQEATRFLLRHPSFSKSTEPFTVVTADRHNLFMGSEYCGAYGYRFWNMYNCSQVGRQYRCGNARSPRPGLPEIQCTRRGGKWVNQSQEINESEPFSFTVNCTASSLGNASGCCGKAGTILPGKWVDSTQGSFTKPKALPPAIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPKHTDILKVLVNSSRTGIRRKRS | |||||||||||||||||||
1 | 6aiiA | 0.05 | 0.04 | 0.83 | 0.64 | DisCoVER | PASDDFNYDFPANKWKNFWHDG-PG---P--TQWRHENVSV------S-N-GH-MN--IV--ASRTFRATQMGCVVSVVEARVKIADAVFANNVWMISDEID-----ICENYGGLGDPGRTTAMNAWFAKHIHLSHHVFNNRHLT-NFDDYQPRDEEGVYGTWYYERTDWASTIGVYWKDPNHLEYYINPMKLIINIEAQDWNA----LAGRYPEIPEDHIMKV-D--WI-RVYTP---------- | |||||||||||||
2 | 1i7qA | 0.08 | 0.06 | 0.75 | 0.67 | DEthreader | -----ARPATLLLES-------TAVSVQAGMLGGLFAYCRRFSL-CPYTLKPSPYMFF-MQDDDF--------LFGAS--PESALKYD-IEIY-PIAGTR--DHKELAHLML----------VDLARN---DLAICSRYVDLTKVLVSRVVGTLRADLDVAYACMNM--G--TLSGPKVR-MQLIALR----SYGGR---V--GYFTAV-NLDTCIV---SAYVEGHRTV-AT-NKARALRATHAK | |||||||||||||
3 | 4z7aA | 0.12 | 0.11 | 0.98 | 0.52 | CEthreader | LAEKRPPPAPRLTFRPADSAADVVPIAEVGDGWFQRVALTNSAGKVVAGAYSRDRTIYTITEPLGYDTTYTWSGSAVGHDGKAVPVAGKFTTVAPVKTINAGFQLADVIIQFDSPISDKAAVERALTVTTDPPVEGGWAWLPDEAQGARVHWRPREYYPAGTTV-----DVDAKLYGLPFGDGAYGAQDMSLHFQIGRRQVVKAEVSSHRIQVVTDAGVIMDFPCSYGEADLARNVTRNGIHVVTE | |||||||||||||
4 | 2x4bA | 0.05 | 0.04 | 0.89 | 0.55 | EigenThreader | SGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNGFRFDL-----MGHIMKRTMMRAKSALQSLTVDGSKIYLYGEGNGSQLNMSGTGIGSFNDRIRDAINGGNPFGQQGFNTGLFLEPNGADQIQIGLAGNLRDYVLISHT--GEAKKGSEIHTFDGLPVGYTA---SPIETINYVSAHDNETSQGI----PFFHAGDEILRSKSIDRDSY----------NSGDWFNK---LDFTYETNNWGV | |||||||||||||
5 | 6vkmA | 0.14 | 0.11 | 0.76 | 0.96 | HHpred | -------------VIHNSAVSDVDKLVCRDKLQLRSVGLNLEG----NG----VATD-VPSVRWGFRSGVPPKVVNANCYNLEIDGSECGIRGFP----------RCRYVHK-VSGT-GPCAGDFAFHKEGAFFLIYRILPQAKKDSTT-IRYQA----TGFGTNETEYL--FEVDNL------TYVQLPQFLLQLNETIYASGKRSNTTGKLI-----WKVNPEIDT--AFWETEVIVN------ | |||||||||||||
6 | 2pffB | 0.12 | 0.01 | 0.11 | 0.57 | MRFsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVRVIVAGTL-------------------MDLYKTSKAAQDVWNR----------- | |||||||||||||
7 | 3cbhA2 | 0.13 | 0.09 | 0.65 | 0.33 | FFAS-3D | --------------------------------------YLDAGHAGWLGWPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNLANHGWSNAFFITDQGRSGKQPTG----QQQWGDWCNVIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSH----------------------CALP--DALQPAPQAGAWFQAYFVQLLTN--------------------- | |||||||||||||
8 | 6f1tg | 0.09 | 0.09 | 0.97 | 0.62 | SPARKS-K | LNRQFFDE----RWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHEPDGWNMKYKKT---TPEYVFHCQSAVMSATFAKNLVVGGTYSGQINRSNKRTPQRTPLSATHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNYTACRHGSKGHQGPAVDFSHLFVTSSFKLWNNKPAGYVYDVMWSHPALFACVDGMGRLDLWNLNNDTEVPTASI | |||||||||||||
9 | 6d5iA | 0.17 | 0.04 | 0.22 | 0.45 | CNFpred | ----------------------------------IVMNGAK----------------CTNPQWKEQGLSENFVAFNLTRMQLIGGTWYGGEMKKGMFSMMNYL----------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6ar6A | 0.03 | 0.02 | 0.72 | 0.67 | DEthreader | ---FDTVNGKLVVNLD------------------------TIDLPTIIATIIDVSLGAAI--K------SETSLTATTAII--------------VPLMPISEIDFNNNSIVQKELDLSKDLMVLPNTNIRINLDSNTRSFI-----ALSLINIELSSDVWINFSGEVNSGFVSLTFS-LEGINAIIEVDLLS----------YKLLISIPYNVITKNILT--S-HISEYFIKTLMIVLVKVEIDG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |