>PF03676 (393 residues) EQWEFILGMPVAQCVQILKRQCRVIKTVQAMYSEANPLAMDLVLNLPNDGIRLVFDPVTQ RLKIIEVYSMNKVKLKYCGVHFNSPQVQPTIEQIDMSFGATHPGVYDPNHQLFILNFRGL SFSFPIDSKFEPYYTHGLGSLKFSSGSSPVVSRMSIYHGNSLTDARAPPLPLQCFHGNCF AESIEIINQDGNVLGLKCFLVAEGTGPGKILELRRRTFERNVMFGDSCQDVISSLGSPCK VFYKAEDKMRIHSPSPHKLAQSKSSDYFFNYFTLGVDILFDACSHLVKKFILHTNFPGHY NFNMYQRCEFKIGIQRDSKDSVLDEGTPFVLTPCTKWDSVQDYLGKPVEAPVVLNRSSST NTTNPFGSTFCYNLQHMIFEVMANNHLASVTLY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EQWEFILGMPVAQCVQILKRQCRVIKTVQAMYSEANPLAMDLVLNLPNDGIRLVFDPVTQRLKIIEVYSMNKVKLKYCGVHFNSPQVQPTIEQIDMSFGATHPGVYDPNHQLFILNFRGLSFSFPIDSKFEPYYTHGLGSLKFSSGSSPVVSRMSIYHGNSLTDARAPPLPLQCFHGNCFAESIEIINQDGNVLGLKCFLVAEGTGPGKILELRRRTFERNVMFGDSCQDVISSLGSPCKVFYKAEDKMRIHSPSPHKLAQSKSSDYFFNYFTLGVDILFDACSHLVKKFILHTNFPGHYNFNMYQRCEFKIGIQRDSKDSVLDEGTPFVLTPCTKWDSVQDYLGKPVEAPVVLNRSSSTNTTNPFGSTFCYNLQHMIFEVMANNHLASVTLY | |||||||||||||||||||
1 | 6fptA2 | 0.08 | 0.05 | 0.63 | 0.81 | DisCoVER | -SYGVGLPMAS-FGG--EGDGDGQLCRPWGICV---DKEGYVVVADRSNNRVQIFKP-CGTFHHK----F----GTLG--------SRP-G--Q---FDRPAGVACDS-QRRIIVADKDNHRIQIFTF---------DGQF-------LLKFGEK------------------GTKNGQFNYPWDVAVN--ILVSDTRNHRVQLFGPDGTFLNKYGFEFDSPRGV-----AF--NQGHLVVTDF---NNHRLLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRN-HRIQVFEPNGNFLCKFGTFGQM------------------------------------D------------------------------RPSGIAVTPGVIVAVDFN- | |||||||||||||
2 | 3azoA | 0.06 | 0.04 | 0.60 | 0.67 | DEthreader | GVWWVAP-P---NRFEYSHFGQRRWERFWRPWEG-----EEAIAQ-AE-W-------------------APDGSLIVATLHRVDGAATQLCRREEEFARWFAPLAN-----GLIAVV--VLGILDP---------------------ESGELVDALVGVEVVELARTARHTDPV---YYPEPQIRTFTAPDGREIHAHIYPPHSD----LDAYTSRGIGVADVNYG---GS--TGYG-R---------------------------AYRE-------RLRGRWGVVDVED-------------------CAAVATALAEEGTADRARLAVRGGGGWPLPLCFHAYLSFEGE-------------------GHGFRRKT--------------- | |||||||||||||
3 | 6d69A | 0.10 | 0.07 | 0.73 | 0.90 | CEthreader | KQVYLRKRQQLFQLGGRGSEPGSFTWPRGLAVGP----DNSIVVADSSNHRVQVFDSNGIFVKEFGEYGNGEG-----------------------EFDCLAGVAVNRIGQYIIADRYNHRIQVLDPQGR---FLRAFGSQGTADGKFNYPWGVTTDALGFIYVC------------------------------------DKENHRVQVFQSDGSF----VGKFGSCGRGEGQLEHPHYIAVSNTNRV------------------IVSDSNNHRIQIFDVNGKVLSTVGGEGSDDGQFKFP------RGVAVDDQ----------GYIFVADSGNNRIQ-IFNPDGSFLKTFGSWGSGDSEFKGLEGVAIMSNGNILVCDRENHRVQVF-- | |||||||||||||
4 | 5nrlP2 | 0.06 | 0.04 | 0.68 | 0.77 | EigenThreader | ADGELKFQ--------------NLFATISMKSLDLPWPTFLALTSDS-GNLSIVQIIGALRLKTLVNQPLTRTT--------LRRVSPI---------------------SYMEIDPNGRCIILSS---------------------VEQNKLCFLVDYA---------QKLRISPPHMVTLDMAVVDVNFNNPCFVTLEIDNAATQL------SVHLIFYVLELGLS--------ANFVLSLP--------------DLSRYNFNPFVVIGFENHILVKDMNGFFSLKVEIRSITNSR-HKNVTNHGDLFKLTVSPDTNDRNR--PLVQLSYFDTI----------QNSHQLHIF---------KNGYLFALSEMNFLFQFEKLGLSILSQQ | |||||||||||||
5 | 3c7uB | 0.12 | 0.04 | 0.35 | 0.43 | HHpred | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFTQIQFGMTRQQVLDIAGANCETGGSFGD-------------SIHCRGHAAGDYYAYATFGFTSDAKVDSKSQEKLLAP--------SAPTLTLA-------------KFNQVTVGMTRAQVLATVG---QGSCTTWSEYYPAYPSTAGVTLSLSCFRGSAHLATDGVLQGKRQW | |||||||||||||
6 | 3p16A | 0.11 | 0.07 | 0.65 | 0.55 | MRFsearch | ---TFRLLRSFADAVSWVAKN-------------AVPVLSGVLLTGSDNGLTISGFD-YEVSAEAQVGAESPGSVLVSGR---------LLSDITRALPNK-PVDVHVEGNRVALTCGNARFSLPTM-----------PVEDYPTLPTLPEETGLLPAE--------------GIRVEILGETVVLAATD-RFRLAVRELKWS-------------DIEAAVLVPATLAEAAKAGIGG-----------------------------------SDVRLSLGTGKDGLLGISGN-------------GKRSTTRLL------------------DAEFPKFRQLLPTEHTAVATMDVAE-------AQVRMEFADGSVRLSAGADVGRAEEDLV | |||||||||||||
7 | 4tr6A | 0.13 | 0.10 | 0.78 | 0.50 | FFAS-3D | SHMKFTIQKRLVESVQDVLKAVSS--------RTTIPILTGIKIVASDDGVSFTGSDSDISIESIPKEEGDIVTIEQPGSIV------LQARFFSEIVKKLPMATVEQNQYLTIIRSGKAEFNYPHLPQIEEHHARQTVFAVSTSETRPILTGVNWKVEQS---------------------ELLCTATDSHRLALRKAKLDIPEDRS----------YNVVIPGKSLTELSKILDD-------NQELVDIVITET--------------------QVLFKAKNVLFFSRLLDGNYPNVVKLSAKPAESIEISSNSPEIGKVVEAIVADQIEGEESPKYMLDALKVLEGAEIRVSFTGAMRP--------------FLIRTPNDETIVQLIL- | |||||||||||||
8 | 6h7tA | 0.08 | 0.07 | 0.87 | 0.76 | SPARKS-K | -------TTNNLQVTYPAPVAADGW-EYRLISTG---LTAPRSIVFDSTGGLLVLDAGVGVRRLTLQDNGGTCLSVTANATLIADTALN--------HGL----AISADGGTIYASTVNDVYAYTYNEQTNTVDTRRTVVTNMTNTDHVTRTELLVSRGSA------ANEDPQARNVTSGHSQIRAYDISTLPTNGGIWSVENSVDDEGVDVHQDNPGEELNFHGGNYGYPDCYALWSTAGFPLEVGDQFASDNATAGVTNFVDPRLVFQAHVSPLDIKFNTNGTT--AYITFHGSTDRTTPVGY--SIVSVAFGLNTSPMDSTTAANNILTSPD-----LTQCPDDCFTPVGLTFDTIG---------------RLFFSSDSTGEIFVLQQS | |||||||||||||
9 | 3ei1A | 0.13 | 0.10 | 0.75 | 1.32 | CNFpred | --LNLLIAK--NTRLEIYVVTAEGLRPVKEVGM---YGKIAVMELFRKDLLFILTAK--YNACILEYKQSESIDIITAHGNVQDRIGRPSE----------IIGIIDPECRMIGLRYDGLFKVIPLDRDNKEL-KAFNIRLE-----ELHVIDVKFLYG-------------------CQAPTICFVYQD--PQGRHVKTYEVSFNKGPWKQENVEEASMVIAVPEPFGGAIIIG-QESITYHNGDKYLAIAPPIIKQ--------TIVCHNRVGSRYLLGDMEGRLFMLLLEKE-----------LKDLRVELLGET---------AECLTYL--------------DNGVVFVGSR-------LGDSQLVKLQGSYVVAME-GPIVDMCVV | |||||||||||||
10 | 3c68A | 0.05 | 0.03 | 0.66 | 0.67 | DEthreader | VINFFDLG---------------YSIPG----------------ALVQTLRFAT--------PRTSLLETK----------------VWDG-ELLEKIAQRKISATR---DGLKVTFTSEYQVHKSLPVQT--EI----FTSKAH----LYTTYSHLLTAEVSKEQPGGVKFRAVFSWQGF---------------PSLAASVMV--KTWVAMYPLVHDWLRDHNG-P-YGATRD-AH--LFTVK-------A-VVEKGQYDSLEIQVAASWESGRDFGVKFAEYSLLQESVDQ------------YLALAYINTCDPLANGC-----WSPLFNGAAQANADAVVKVMDKEFNTFV-----------PLGTAATNPWRVQFWFGLKGM----- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |