>PF03547 (402 residues) VVAALVPLYVALFLAYGSVRWWKIFTPEQCSGINRFVSVFAVPFLSFHFISNNNPYTMNF RFLAADSLQKVVILVALVLWNSLTKWGSINWTITLFSLSTLPNTLIMGVPLLKAMYGDFT ATLMIQIVVFQSVIWYTLLLFMFEYRGAKLLISEQFPESAGAIATLRVDSSVSSLNGTEA LHADAEIGEKGELHVVVRSMPRSVPSSFNKSYSTPRSSNAGFEKGMVKNEEVDTNKNQQM PRAKVMINLILTMVWRNLIRNPNTYASILGLIWSLIFFRWSIKMPSIIKGSIEIISNTGL GMAMFSLGLFMALQPKIITCGKTLAALAFAIKFLVGPFIILATSKIIGIHGVLLRVTIVQ AVLPQGIVPFVFAREYNLHTDILSTAVIFGMVVALPVTIIYY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VVAALVPLYVALFLAYGSVRWWKIFTPEQCSGINRFVSVFAVPFLSFHFISNNNPYTMNFRFLAADSLQKVVILVALVLWNSLTKWGSINWTITLFSLSTLPNTLIMGVPLLKAMYGDFTATLMIQIVVFQSVIWYTLLLFMFEYRGAKLLISEQFPESAGAIATLRVDSSVSSLNGTEALHADAEIGEKGELHVVVRSMPRSVPSSFNKSYSTPRSSNAGFEKGMVKNEEVDTNKNQQMPRAKVMINLILTMVWRNLIRNPNTYASILGLIWSLIFFRWSIKMPSIIKGSIEIISNTGLGMAMFSLGLFMALQPKIITCGKTLAALAFAIKFLVGPFIILATSKIIGIHGVLLRVTIVQAVLPQGIVPFVFAREYNLHTDILSTAVIFGMVVALPVTIIYY | |||||||||||||||||||
1 | 3zuxA | 0.13 | 0.05 | 0.36 | 1.05 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ILSKISSFIGKTFSLWAALFAAAAFFA-------PDTFKW-AGPYIPWLLGIIMFGMGLTLKPSDFDLFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIF | |||||||||||||
2 | 5a1sA | 0.12 | 0.10 | 0.84 | 1.51 | SPARKS-K | LVGGFALMFVMGAIFGEIGKRAGIFTQKEIDAISNVMLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRIMMLYV---------LPIMGGGNGA-GAVPLSEIYHSVTTAIAILTIANIFAIIFAALLDMVGKKYTWLSGEG-------------ELVRKASFKT-------------------EDDEKAGQIT-------------------HRETAVGMVLSTTCFLLAYVVAKKYFAWMVLIVAALNASG---LCSIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIAS | |||||||||||||
3 | 4n7wA | 0.07 | 0.05 | 0.72 | 1.18 | MAPalign | --LVTRLFPVWALLLSVAAYFRPTT-FTGIGPYVGPLLMLIMFAMGVT-LRLDDFKRVRPAPVAAATFLHYIMPLTAWILAMLFRM-PPDLSAGMVLVGSVA-SGTASNVMIYLAK--GDVALSVTISAVSTLVGVFATPLLTRLY-------------------------------------------------------------------------------------------------VDATISVDVVGMLKSILQIVVIPITAGLVIHHT-------FTKTVKRIEPYLPAMSMVCILAIISAVVAGSQSHIASVGFVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKI--YFSPLAALPGALFSVWHNLSGSLLA | |||||||||||||
4 | 3zuxA | 0.07 | 0.05 | 0.70 | 2.36 | HHsearch | FIGKTLWAALFAAAAFFAPD-TF--KW---A---GPYIPWLLGIIMFGMGLTLKPSDFHPKVVIIGVIAQFAMPATAWCLSKLLNLPA-EIAVGVILVGCCPGGTASN--VMTYLAGNVAL--SVAVTSVSTLTLTPAIFLMLA--------------------------------GE-----------ML--------------------------------------------------------EIQAAGMLMSIV-KMVLLPIVLGLIVHKVLG----SKTEKLTDA---LPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAFAAAPVVAALFSVWHNISGSLLATYWA | |||||||||||||
5 | 5a1sA | 0.11 | 0.09 | 0.83 | 1.13 | FFAS-3D | --DLVGGFALMFVMGAIFGEIGKIFTQKEIDAISNVFLNLFIAVLITGAILSVNLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSREEYYSTAIAILTIANIFAIIFAALLDMVGKK-----------------------------------------------------------------YTWLSGEGELVRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKYFAWMVLIVAALNASGL-CSPEIKALSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVI-- | |||||||||||||
6 | 4bwzA | 0.09 | 0.07 | 0.85 | 1.51 | SPARKS-K | KRLNQPVVIGEVLAGVLVGPALGLVHE---GEILEFLAELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFETLPALFLGTALVAT---SVGITARVLQELVLSRPYSRIILGAAVIDDVLGLIVLACVNGVAETGQ------------VEVGAITRLIVLSVVFVGLAVFLST---------------------------------LIARLPLERLPVGSPLGFALALGVGMAALAASIGLAPIVGAFLGGMLLSEVREKYRL------EEPIFAIESFLAPIFFAMVGVRLELSALASPVVLVAGTVVTVIAILGKVLGGFLGAL----TQGVRSALTVGCGMPRGEVGLIVAALGLVNEEEYAIVLFMVVFTTLFAPFALK | |||||||||||||
7 | 3zuxA | 0.06 | 0.04 | 0.72 | 1.18 | MAPalign | -ISSFIGFSLWAALFAAAAFFAPTF--KWAGPYIPWLLGIIMFGMGLTLKPSDFDILFHPKVVIIGVIAQFIMPATAWCLSKLLNL-PAEIAVGVILVGCCP-GGTASNVMTYLAR--GNVALSVAVTSVSTLTSPLLTPAIFLMLA---------------------------------------------------------------------------------------------GEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSK-----------TEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLA | |||||||||||||
8 | 4n7wA | 0.10 | 0.07 | 0.70 | 2.30 | HHsearch | KITRLFPALLLSVAAYFRPT--------TFTGI-GPYVGPLLMLIMFAMGVTLRLDDFRPAPVAAATFLHYLMPLTAWILAMLFRMPP-DLSAGMVLVGSVASGTASN--VMIYLAGDVA--LSVTISAVSTLVATPLLTRLY--------------------------------VDA-----------TIS-----------------------------------------------VD---------VVGMLKSI-LQIVVIPITAGLVIHHTF-------TKTVKRIEPYLPAMSMVCILAIISAVVAGSQSHIASVGFVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFS-PLAGALFSVWHNLSGSLLAGYWS | |||||||||||||
9 | 4czbA | 0.13 | 0.10 | 0.78 | 1.12 | FFAS-3D | YLGLALDIPLLLLLGLIIGPFLQIIPSDSAMEIFEYAGPIGLIFILLGGAFTMRLKRVIKTVVRLDTITFLITLLISGFIFNMVLNLPYTSPVGYLFGAITAATTLIPVEVAITLEAESIFNDPLGIVSTSVILGGAIVVGLLLAKIYEKIIIH-----------------------------------------------------------------------------------CDFHEYVAPLVLGGAMLLLYVGDSGYMAVAIMGLYLGDALFRADDIDYKYIVSFCDDLSLLARVFIFVFLGACIKLS-MLENYFIPGLLVALGSIFLARPLGVFLGLIGSKHS--FKEKLYFALEGPRGVVPAALAVTVGTPTDIAGTIIIGTFMTILLSVIL-- | |||||||||||||
10 | 4czbA | 0.11 | 0.09 | 0.84 | 1.45 | SPARKS-K | EKLKIPDIPLLLLLGLIIGPFLQIIPSDSAMEIFEYAGPIGLIFILLGGAFTMRISLIKTVVRLDTITFLITLLISGFIFNMVLNLPYTSPVGYLFGAITAATD----PATLIPVFNPEVAITLEAESIFNDPLGIVSTSVILGLF--------GLFSSSNPLIDLITLAGGAIVVGLLLAKIYEKIIIHCDF-------------------------------------------------HEYVAPLVLGGAMLLLYVGGYMAVAIMGLYLGDALFRADDIDYKYIVSFCDDLSLLARVFIFVFLGACI--KLSMLENYFIPGLLVALGSIFARPLGVFLGLIGSKHSFKEKLYFALEGVVPAALAVTVGIEILKITPTDIAGTIIIGTFMTILLSVILE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |