Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | KKKPLIGMVHLKPLPGSYHYNDNFDDIVDFAIKEAKKLEEAGFDAVMIENFGDAPFKKEADKITIASMAVIAKAIKEEVSLPLGINILRNDAIGAYSIAYVVKADFIRVNVLSGVAFTDQGIIEGKAYELAKLKKLLPSKIKVFADVHVKHAYHFIDFESSLLDTVERGLADAVIISGKRTGKEVDIEKLKLAKELVDVPVIVGSGTNYNNLRILWSYADGFIIGTWIKKDGKANNEIDIDRAKKIVNLANK |
1 | 5vanA1 | 0.08 | 0.08 | 0.98 | 1.33 | DEthreader | | PKFFWGIGTGAVEGS-WKKDG-DSYIFLEKDLSALDFI--G-VSFYQFSISWPRLFPDGVANAGLQYYSTLLDALVL-RNIEPIVTLYWLFNDYATYCFQMFRVKYWITIHPVAGYAAVYTGHLIKHSKWHNYNTHFRPKGWLSITLGSHWIQSMVSLGWFANPIHGRGTADFAFSFGPNNFKSLNLEALNWIKLEYNPRILIENGWAMKFLSQVLQAVFGYTAWSRGLFYVDSKERKPAHYYKQIIRENGF |
2 | 1wcgA | 0.07 | 0.07 | 0.98 | 1.33 | DEthreader | | PKFMFGTSTASIEGWDGDIA--C--DSYHKYKEDVAIIKDLNLKFYRFSISWARIAPSGSLEKGIAYYNNLINELIK-NDIIPLVTMYHLFKEYARVLFTYFRVKWWITFNEPIAVCKHYLGHTQLHGKAYRLYEMFKQNGKISISISGVFFAANQFRGWFGHPVYKKGTAFYALNHYSNYIIPVGLKLLIWLKNEYNPLLITENGYKISYLKNYLNATVGYTVWSLLDGKIDFRTRTKRESYTYFKNVVGK |
3 | 4aajA | 0.17 | 0.13 | 0.74 | 2.05 | HHpred | | -----------------------------KSLEELEI-VEKHADATGVVVNS--NSKRRIPLEKAREIIENS-----A-IPVFLVSTM-VGFSEWAMAIERTGAQYIQVH---S----N-----ALPQTIDTLKKEFG--VFVMKAFRVPTISKNPEANRLLSEI-SRYNADMVLLDTH------DLRVS-SLVA-RKIPVIVAGGLNAENVEEVIKKPYGVDVSSGVEKYG----IKDPKLVEEFVRRAKN |
4 | 5b69A | 0.19 | 0.16 | 0.85 | 0.64 | DisCoVER | | TGKVHMTLIDPG-AK-----------PPQECARIAEEAEMAGTDFIMVGGSTDID---------SRAMDEAISAIKAKTDLKVIIFPGSS-L-----MI-SPKADAIFFMSLLNSGSLE-YVVHQV-KAAIPL-SAMKIEKIPMAYLVFDPGGKAHLALSYALAAQY-FGFRLVYFEAGSGSYHVGENVVRRVKQELDIPVIVGGGIRTPEAKALAAGADMIVTGTIAE-----RSNV-YEALHPIVESIK- |
5 | 1nsjA | 0.14 | 0.11 | 0.77 | 0.35 | MRFsearch | | ----RVKICGIT------------------NLEDALFSVESGADAVGFVFYP--KSKRYISPEDARRISVELPP------FVFRVGVFVNEPEKILDVASYVQLNAVQLHGEE------------PIELCRKIAERI----LVIKAVGVS-------NERDMERALNY-REFPILLDTKGSGKTFDWSLILPYRDR-FRYLVLSGGLNPENVRSAIDVPFAVDVSSGVEAF---PGKKDHDSIKMFIKNAKG |
6 | 5n2pA | 0.17 | 0.15 | 0.87 | 0.96 | SPARKS-K | | -GKMLVVYMTL----GYPNV--------QSFKDFIIGAVENGADILELGIPPKYAKYDGVIRKSYDKIWPLIEDIRKDVGVPIIALTYLEDWVNFLNMIKDVKLDGILFPD----------LLIDYIDDLDKIDGIIKNGLKNVIFTSPSVP------DLLIHKVSK-ISDLFLYYGVRPTIPVSVKQLINRVRNLVENKLIVGFGLSESDLRDALSGADGIAIGTVFIEEIERNG---VKSAINLVKKFRA |
7 | 3gr7A | 0.11 | 0.10 | 0.91 | 0.34 | MAPalign | | --NRIVMSPMCMYS------CDTKDGAVTWHKIHYPARAVGQVGLIIVETGVTPQGLGIWSDDHIAGLRELVGLVK-EHGAAIGIQLAHAGFQNGARRAKEAGFDVIEIHAAHGFLGGSPENRRFLGEVIDAVREVW--DGPLFVRISASDYHTAKDYVPYAKRMKE-QGVDLVDVSSGVYPGYQ-VPFAELIRREADIPTGAVGLITGWQAEEILQRADLVFLGREL--------LRNPYWPYAAAREL-- |
8 | 3ajxA | 0.17 | 0.14 | 0.80 | 0.36 | CEthreader | | --MKLQVAIDLLS--------------TEAALELAGKVAE-YVDIIELGT-----------PLIKAEGLSVITAVKKAHPKIVFADMKTMDGELEADIAFKAGADLVTVLGSAD---------DSTIAGAVKAAQAHN--KGVVVDLI-----GIEDKATRAQEVRA-LGAKFVEMHAGLDEQGFDLNGLLAAGEKARVPFSVAGGVKVATIPAVQKGAEVAVAGGAIYGAADP-----AAAAKELRAAIA- |
9 | 5n2pA | 0.17 | 0.15 | 0.89 | 0.89 | MUSTER | | -GKMLVVYMT----LGYPN--------VQSFKDFIIGAVENGADILELGIPPKYAKYDGIRKSYDKVIWPLIEDIRKDVGVPIIALTYLEDLENFLNMIKDVKLDGILFPDLLIDY-------IDDLDKIDGIIKNKG--LKNVIFTSPSVPD--LLIHKVSKISDLFLYYGVRPTTGVPIPVSV-KQLINRVRNLVENKLIVGFGLSESDLRDALSAADGIAIGTVFIEEIERNG---VKSAINLVKKFRA |
10 | 5lheA | 0.14 | 0.11 | 0.79 | 1.50 | HHsearch | | ---------------------VEFVKICGKTMDELRL-VERYADATGVVVN---SRSRKVPLKTAAELIEMA-----E-IPIYLVSTM-KTFPEWANAVEKTGAEYIQVH-------SDM-----HPKAVNRLKDEYG--VSVMKAFMVPRESDDPAAERLL-ELIGQYEVDKILLDTVGSGRRHDYRVSAI--IAKEYPIVLAGGLTPENVGEAIRKPAGVDVSSGVERN----GVKDRVLIEAFMAVVRN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|