>PF03437 (252 residues) KKKPLIGMVHLKPLPGSYHYNDNFDDIVDFAIKEAKKLEEAGFDAVMIENFGDAPFKKEA DKITIASMAVIAKAIKEEVSLPLGINILRNDAIGAYSIAYVVKADFIRVNVLSGVAFTDQ GIIEGKAYELAKLKKLLPSKIKVFADVHVKHAYHFIDFESSLLDTVERGLADAVIISGKR TGKEVDIEKLKLAKELVDVPVIVGSGTNYNNLRILWSYADGFIIGTWIKKDGKANNEIDI DRAKKIVNLANK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | KKKPLIGMVHLKPLPGSYHYNDNFDDIVDFAIKEAKKLEEAGFDAVMIENFGDAPFKKEADKITIASMAVIAKAIKEEVSLPLGINILRNDAIGAYSIAYVVKADFIRVNVLSGVAFTDQGIIEGKAYELAKLKKLLPSKIKVFADVHVKHAYHFIDFESSLLDTVERGLADAVIISGKRTGKEVDIEKLKLAKELVDVPVIVGSGTNYNNLRILWSYADGFIIGTWIKKDGKANNEIDIDRAKKIVNLANK | |||||||||||||||||||
1 | 5vanA1 | 0.08 | 0.08 | 0.98 | 1.33 | DEthreader | PKFFWGIGTGAVEGS-WKKDG-DSYIFLEKDLSALDFI--G-VSFYQFSISWPRLFPDGVANAGLQYYSTLLDALVL-RNIEPIVTLYWLFNDYATYCFQMFRVKYWITIHPVAGYAAVYTGHLIKHSKWHNYNTHFRPKGWLSITLGSHWIQSMVSLGWFANPIHGRGTADFAFSFGPNNFKSLNLEALNWIKLEYNPRILIENGWAMKFLSQVLQAVFGYTAWSRGLFYVDSKERKPAHYYKQIIRENGF | |||||||||||||
2 | 1wcgA | 0.07 | 0.07 | 0.98 | 1.33 | DEthreader | PKFMFGTSTASIEGWDGDIA--C--DSYHKYKEDVAIIKDLNLKFYRFSISWARIAPSGSLEKGIAYYNNLINELIK-NDIIPLVTMYHLFKEYARVLFTYFRVKWWITFNEPIAVCKHYLGHTQLHGKAYRLYEMFKQNGKISISISGVFFAANQFRGWFGHPVYKKGTAFYALNHYSNYIIPVGLKLLIWLKNEYNPLLITENGYKISYLKNYLNATVGYTVWSLLDGKIDFRTRTKRESYTYFKNVVGK | |||||||||||||
3 | 4aajA | 0.17 | 0.13 | 0.74 | 2.05 | HHpred | -----------------------------KSLEELEI-VEKHADATGVVVNS--NSKRRIPLEKAREIIENS-----A-IPVFLVSTM-VGFSEWAMAIERTGAQYIQVH---S----N-----ALPQTIDTLKKEFG--VFVMKAFRVPTISKNPEANRLLSEI-SRYNADMVLLDTH------DLRVS-SLVA-RKIPVIVAGGLNAENVEEVIKKPYGVDVSSGVEKYG----IKDPKLVEEFVRRAKN | |||||||||||||
4 | 5b69A | 0.19 | 0.16 | 0.85 | 0.64 | DisCoVER | TGKVHMTLIDPG-AK-----------PPQECARIAEEAEMAGTDFIMVGGSTDID---------SRAMDEAISAIKAKTDLKVIIFPGSS-L-----MI-SPKADAIFFMSLLNSGSLE-YVVHQV-KAAIPL-SAMKIEKIPMAYLVFDPGGKAHLALSYALAAQY-FGFRLVYFEAGSGSYHVGENVVRRVKQELDIPVIVGGGIRTPEAKALAAGADMIVTGTIAE-----RSNV-YEALHPIVESIK- | |||||||||||||
5 | 1nsjA | 0.14 | 0.11 | 0.77 | 0.35 | MRFsearch | ----RVKICGIT------------------NLEDALFSVESGADAVGFVFYP--KSKRYISPEDARRISVELPP------FVFRVGVFVNEPEKILDVASYVQLNAVQLHGEE------------PIELCRKIAERI----LVIKAVGVS-------NERDMERALNY-REFPILLDTKGSGKTFDWSLILPYRDR-FRYLVLSGGLNPENVRSAIDVPFAVDVSSGVEAF---PGKKDHDSIKMFIKNAKG | |||||||||||||
6 | 5n2pA | 0.17 | 0.15 | 0.87 | 0.96 | SPARKS-K | -GKMLVVYMTL----GYPNV--------QSFKDFIIGAVENGADILELGIPPKYAKYDGVIRKSYDKIWPLIEDIRKDVGVPIIALTYLEDWVNFLNMIKDVKLDGILFPD----------LLIDYIDDLDKIDGIIKNGLKNVIFTSPSVP------DLLIHKVSK-ISDLFLYYGVRPTIPVSVKQLINRVRNLVENKLIVGFGLSESDLRDALSGADGIAIGTVFIEEIERNG---VKSAINLVKKFRA | |||||||||||||
7 | 3gr7A | 0.11 | 0.10 | 0.91 | 0.34 | MAPalign | --NRIVMSPMCMYS------CDTKDGAVTWHKIHYPARAVGQVGLIIVETGVTPQGLGIWSDDHIAGLRELVGLVK-EHGAAIGIQLAHAGFQNGARRAKEAGFDVIEIHAAHGFLGGSPENRRFLGEVIDAVREVW--DGPLFVRISASDYHTAKDYVPYAKRMKE-QGVDLVDVSSGVYPGYQ-VPFAELIRREADIPTGAVGLITGWQAEEILQRADLVFLGREL--------LRNPYWPYAAAREL-- | |||||||||||||
8 | 3ajxA | 0.17 | 0.14 | 0.80 | 0.36 | CEthreader | --MKLQVAIDLLS--------------TEAALELAGKVAE-YVDIIELGT-----------PLIKAEGLSVITAVKKAHPKIVFADMKTMDGELEADIAFKAGADLVTVLGSAD---------DSTIAGAVKAAQAHN--KGVVVDLI-----GIEDKATRAQEVRA-LGAKFVEMHAGLDEQGFDLNGLLAAGEKARVPFSVAGGVKVATIPAVQKGAEVAVAGGAIYGAADP-----AAAAKELRAAIA- | |||||||||||||
9 | 5n2pA | 0.17 | 0.15 | 0.89 | 0.89 | MUSTER | -GKMLVVYMT----LGYPN--------VQSFKDFIIGAVENGADILELGIPPKYAKYDGIRKSYDKVIWPLIEDIRKDVGVPIIALTYLEDLENFLNMIKDVKLDGILFPDLLIDY-------IDDLDKIDGIIKNKG--LKNVIFTSPSVPD--LLIHKVSKISDLFLYYGVRPTTGVPIPVSV-KQLINRVRNLVENKLIVGFGLSESDLRDALSAADGIAIGTVFIEEIERNG---VKSAINLVKKFRA | |||||||||||||
10 | 5lheA | 0.14 | 0.11 | 0.79 | 1.50 | HHsearch | ---------------------VEFVKICGKTMDELRL-VERYADATGVVVN---SRSRKVPLKTAAELIEMA-----E-IPIYLVSTM-KTFPEWANAVEKTGAEYIQVH-------SDM-----HPKAVNRLKDEYG--VSVMKAFMVPRESDDPAAERLL-ELIGQYEVDKILLDTVGSGRRHDYRVSAI--IAKEYPIVLAGGLTPENVGEAIRKPAGVDVSSGVERN----GVKDRVLIEAFMAVVRN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |