>PF03419 (297 residues) VVYVDILFIVNLLINYMLLWTTGKISKKQMSVIRLLIGSLIGAIYAVIMFFPAFKIYYTV IAKIIFSMALIAITFNIEKVKDFFRVLAIFYVVSFTFGGTALGLFYFTNVGAFIGAILSN GVIYFTLPWKVLVISSFIAYIIIRITWQVFYKKISKENMFIPLLIMFDNKSICVNALIDT GNSLYDPISNFPVVVVEFQAIKDLLPEDIQKIFNECSENDLSLISKIMSNSVWISRFRLI PFSSLGKENGMLIGFKPDEIEIIEGEHKKDIKDIIVGIYNKRLSKDETYKALLNPEI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | VVYVDILFIVNLLINYMLLWTTGKISKKQMSVIRLLIGSLIGAIYAVIMFFPAFKIYYTVIAKIIFSMALIAITFNIEKVKDFFRVLAIFYVVSFTFGGTALGLFYFTNVGAFIGAILSNGVIYFTLPWKVLVISSFIAYIIIRITWQVFYKKISKENMFIPLLIMFDNKSICVNALIDTGNSLYDPISNFPVVVVEFQAIKDLLPEDIQKIFNECSENDLSLISKIMSNSVWISRFRLIPFSSLGKENGMLIGFKPDEIEIIEGEHKKDIKDIIVGIYNKRLSKDETYKALLNPEI | |||||||||||||||||||
1 | 1pw4A2 | 0.06 | 0.02 | 0.40 | 0.58 | DisCoVER | ------------------------------------------------------------------------------------------------------------------------------------------------------------IFMQYVNLL----------------WYI------AIANVFVYLLRYGIVKHFALDKSSYAGIPGTLLCGWMSDKVFRGNRGATGFMTIVIGFLIYGPVIGLHALELAPKKAAGTAAGFTGGYGSVAAVMIGGSILAVLLI- | |||||||||||||
2 | 5yijA | 0.06 | 0.04 | 0.70 | 0.83 | DEthreader | ARQHHGSHTLRTMAYAELIVEEARKAKLADVETPAHVLINQGHMVDLVRV-K---Q-PPESFLQRYFSSMQRW-I-------GSQATEAVFGIQRQFFHATYEVVGMDYWNRLN----------RACENDFCLKQLQTAHDKAKIEP-IK-AF---------------------------AKCEMAVG--------EFHSTNPEAVP--VKI---G------EYWINDQRINDLIFLMFVNA-NFVL-TTLMTTSL-FRGLNLSEETNVIFEEFSVY----------------VALF | |||||||||||||
3 | 1fivA | 0.13 | 0.04 | 0.35 | 0.57 | CEthreader | ----------------------------------------------------------------------------------------------------------------------------------------------------VGTTTTLEKRPEILIFVN----GYPIKFLLDTGAD---------ITILNRRDFQVKNS----------------------------IENGRQNMIGVGGGK-RGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQP----LLGRDN | |||||||||||||
4 | 6xlpA | 0.08 | 0.07 | 0.92 | 0.82 | EigenThreader | YREKVSQMVSWGHWFALFNILLSLVIGSRYLFIASFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHVPVILLLELVFATWSWQKIWADANFYRPITMQRANPLSYPMTARRFLEKHQEYQRRLIEQG--------NGTGQNV--LLITV--DGLN---------YSRFEKQMRHSSGNTTDNGIFGLFYGINWLGRYAQEDNNALRDSGKLDNVIITAGRGIEETFDWSHGHLQVP---LVIHWPGTPAQRINALTDHTDVSTPASEYSQGTAADNDT | |||||||||||||
5 | 1fmbA | 0.14 | 0.04 | 0.30 | 0.33 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------NLEKRP--TTIVLINDTP--LNVLLDTGADT---------SVLTTAHYNRLKY----------------------RGRKYQ------G-TGIGGVGGNVETFS-TPVTIKKKGRHI-KTRMLVA--DIPVT-------ILGRD- | |||||||||||||
6 | 5lq3A | 0.13 | 0.10 | 0.81 | 0.23 | MRFsearch | --ESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMVSLLGTFAGLYVLGFSINLLTLFALILAIGIVFVPVSFISGFVGEIQRQFALTLAISVTISGFVPSLCALFLRRDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLEEDQGLMISIINLPNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRSADQIIAELNKKF--------------AFDRNASSVFIGLPSITGGFEMYVQN---------------------------------------- | |||||||||||||
7 | 6w25A1 | 0.13 | 0.09 | 0.67 | 0.57 | FFAS-3D | VVFV-TLGVISLLENILVIVAIAKNKNLHSPMYFFICSLAVADMLVSVSLGFETIVSVICASLLASICSLLSIAVDRMTVKRVGIIISCIWAACTVSGILMASLYVHMFLMARLHGIDSRQGANMKGAITLTILIGVFVVCWAPFFLHLIFYISCPQN----PYCVCFMSHFNLYLILIMCNSIINPL------------IYALRSQELRKTFKE---------------------------------------------------------------------------------- | |||||||||||||
8 | 5ezmA | 0.06 | 0.05 | 0.74 | 0.81 | SPARKS-K | WTAMRARFRPALMAGIWAIAIFVFFSISRSKLPGYIVPVIPALGILAGVALDRLSPRSWGKQLIGMAIVAACGLLALNANSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGV-------------LPSVAVYAMGMYLGFTVALLGHETVGRPASTPEMPL---YGVQ---------------MLDHYLRHPLMMVGADELTFGAVDSFTKLWKNGQPAMSPDTYLALAPTYVVWRRVVVANVASLAGPQ----------------------------------------------- | |||||||||||||
9 | 4he8G | 0.12 | 0.06 | 0.51 | 0.87 | CNFpred | --LADALGTLYKVGVFAFFRFAIPLAPEGQAQGLLLFLAALSALYGAWVAFAAKDFKTLLAYAGLSHMGVAALGVFSGTPEGAMGGLYLLAASGVYTGGLFLLAGRLYERTGT-YRGLAQSAPGLAALALILFLAMVGSGFPGEFLTLLGAYKAS---------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6xlpA | 0.08 | 0.05 | 0.68 | 0.67 | DEthreader | -EKSQMVSWGHWFALFNILLSLVIGSRYL------------------------------------------------GRIYSYVSIIGHFSFLVFATYLILFPLTF-IV--GS-----------QRLMRFLSVILATAGMTLLLIDSVFTHLANDAVSVQYPLL-GGQNVLL--------------FTRHMSSGGIFSPLYLFSMDTAVSFNGTNIDDFAYSAAGNVDINVLVVIITAGRGIEE-FDWSHLQVLHLMTLMQV-T--SEYSGQDLF---A--ADND-------DEKR- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |