>PF03410 (596 residues) MIVLSNGVRIFINPYMIKDIYLGIASFGFENDIGNILGVAHLLEHILISFDSSKYVANAS TARSYMSFWCNSIKGRSNRLDAIKTLISWFFTGNGRIKDIFTPTKIKDHIKELENEYYFR NEIFHCMDVLTFLSDGDLYNGGRIDMINDIDTLENILYSRMHRIIGPNTIIFIKELDEET LSLLSNTFGKLPSCPLTIPCNSFSSIVGKVVMMPSPFYTVMVNVKQSLENILAIMCLYEI YHLIDYETVGDQLYITISFVKEHEYDNFLKGVSMLKFIPDEIKFNHSDDFLMNLYLCFPW IKNDIFDYIVDVNNNMLNMFKSLEDEIYTSIRYGKYISIYPNFSKSIFNKTDRQKHKIVV LDCKIDHENKDSSNIINNNIYLMKKQMINNEIHIKYGDKAFIDYAILGIMYKNNKIFKSN HGINIHHQFSSDDINTILESDTFLKYSKSKPAAIYQYLILSFFVSGNSIEDILSKRESTI NFCKDYKNKILFGKQLRYDIKTNSSFVCGIVKGSSISNETLTNLMWSLKKKGLIYSLEFT KLDKKIFYIFMFTIYPEDVFKIITSNKMFNRHCIVVSNKSDIEDFSSLKKDIIIKI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MIVLSNGVRIFINPYMIKDIYLGIASFGFENDIGNILGVAHLLEHILISFDSSKYVANASTARSYMSFWCNSIKGRSNRLDAIKTLISWFFTGNGRIKDIFTPTKIKDHIKELENEYYFRNEIFHCMDVLTFLSDGDLYNGGRIDMINDIDTLENILYSRMHRIIGPNTIIFIKELDEETLSLLSNTFGKLPSCPLTIPCNSFSSIVGKVVMMPSPFYTVMVNVKQSLENILAIMCLYEIYHLIDYETVGDQLYITISFVKEHEYDNFLKGVSMLKFIPDEIKFNHSDDFLMNLYLCFPWIKNDIFDYIVDVNNNMLNMFKSLEDEIYTSIRYGKYISIYPNFSKSIFNKTDRQKHKIVVLDCKIDHENKDSSNIINNNIYLMKKQMINNEIHIKYGDKAFIDYAILGIMYKNNKIFKSNHGINIHHQFSSDDINTILESDTFLKYSKSKPAAIYQYLILSFFVSGNSIEDILSKRESTINFCKDYKNKILFGKQLRYDIKTNSSFVCGIVKGSSISNETLTNLMWSLKKKGLIYSLEFTKLDKKIFYIFMFTIYPEDVFKIITSNKMFNRHCIVVSNKSDIEDFSSLKKDIIIKI | |||||||||||||||||||
1 | 1q2lA | 0.13 | 0.12 | 0.96 | 1.36 | HHpred | AIRLDNGMVVLLVSDPQALSALVV-PVGSLEDPEAYQGLAHYLEHMSLM-GSKGGSHNASTAPYRTAFYLE-VEND-ALPGAVDRLADAIAEPL------LDKKYAERERNAVNAELTMARDGMRMAQVSAETINPAKFSGGNLETLSDKPPVQQALKDFHEKYYSANAVIYSNKPLPELAKMAADTFGRVPNKESKKPEPVVDAQKGIIIHLPRKVLRVEFRIDNNSAKTDELITLIGNRGLVNSDPNGNSGVLAISATDKGNRDQVVALLREKGIDKQYFDMDYVEWLADTMIR-VPVE--HTLDAVNIADRYDAKAVKERLAMM--TPQNARIWYISPKEPHNFVDAKAADIA-LS-LPELNPYPDDIKSEKKYDHPELIVD-ESNLRVVYAPSRYFPKADVSLILRGISFSTN-ANNGLMVNANGYTQRLPQLFQADQLDSAEKGKAFEQAIMPAQMLSQVPITLKEVLAYRDALKSLAGARNKDVVVDKKQSVIFEKDSALAAVFVPTGYDLGQIVQPWFYQLREEQLGYAVFAFPMSGRQGMGFLLDKQPSFLWERYKAFFPTAEAKL---RAMKPDEFAQIQQAVITQM | |||||||||||||
2 | 2g47B | 0.07 | 0.07 | 0.98 | 1.32 | MAPalign | IGIDKREYRGLELANG-IKVLLISDSLSDPPNIAGLSHFCQHMLFLSQFLSEHAGSSNAFTSGEHTNYYF-DVSHEH-LEGALDRFAQFFL------CPLFDESCKDREVNAVDSEHEKNVRLFQLEKATGNPKHPFSKFGNKYTLETRPIDVRQELLKFHSAYYSSLMAVCVLGREDDLTNLVVKLFSEVENKNVPLPEFPEHPFYKIVPIKDIRNLYVTFPIPDLQNPGHYLGHIGVNTLVGGQKGARGFMFFIINVLTEEDIILHMFQYIQKLRAEGPQEWVFQCKDLNAVAFRFKDKERPRGYTSKIAGILTAEYLPDLIEMVLDKLRPENVRVAIVTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFAYLHCNMAYLYLELLKGLSYDLQNTIYGMYLSVKGQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNTKDELKEALDVTLPRLKAFIPQLLSRLLIEHAHTKPLVHNNCGIEIYYQTLELFCQIISEPCFTLRTEQLGVFSGPRRANGIQGLRFIIQSLESRVEAFLITMPRRHKVSVHVLAREMDSCPVVGEINLSQAP | |||||||||||||
3 | 1q2lA1 | 0.16 | 0.05 | 0.33 | 1.36 | HHsearch | AIRLDNGMVVLLVSDPAVKSLSALVPVGSLEDPEAYQGLAHYLEHMSLMGSKKGGSHNASTAPYRTAFYLEVENDA--LPGAVDRLADAIAEP------LLDKKYAERERNAVNAELTMARTRMRMAQVSAETNPAHPGSGGNLETLSVQQALKDFHEKY---YSANLMAVIYSNKPLELAKMAADTFGRVPNKESKKPEITVPV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 5cioA | 0.12 | 0.11 | 0.97 | 1.23 | FFAS-3D | -WQLDNGLAVRATPGAEAAAALVRIEAGSFQAPAAWPGLAHLLEHMLFRGSANFSRLNATTQATQTAFFFEVGA--DPLAEGLARLSDMLAAP------QLAAEAIAQEIEVIDAEYRLLDGETRCEAAQRQMFSGFFHIGSRAAFGSDISALQQALRQFHHHYYRAPLWLQGPQSLEQLHALAQRYGGGLPSGSETLPPLAAGQDYTLSLPGAPQLRLVFTLPHCRSRGWLRRLLLARLRAHAWGDAVENSALLSFIFTSASEAAHIESALLAWLQALNALTPGQLAHFGQLANRDFH--RLAPLDQLRARALGLPPTEQDWTRQLAMLMAAPRRRLAVLP--EGGGETREIQGLPLTLGPFVGAALTPTVEPFRQAPLRHLHPDEAQPVLLLRPSSQAALRPEAAELAHREGHLSRHQGVWLLQLAGSHGLICHGLNVRALTAQPPAIINEAARNLRHAQLKQQNDIRRLLAQKRRLSHLLYDFPYAITAHPPVTLTESGAEHALLQFYPLQSDEAEGLARLYARLRERNVGYVVTFHRCTHVEGLLFALQSPRQLTDEFLQQMHHELT-------HVSVGELEQTQQALQQNL | |||||||||||||
5 | 5cioA | 0.12 | 0.12 | 0.93 | 1.28 | HHpred | -WQLDNGLAVRAISTPGAEALVRI-EAGSFQAPAAWPGLAHLLEHMLFRSAQDGWRLNATTQATQTAFFFE-VGAD-PLAEGLARLSDMLAAP------QLAAEAIAQEIEVIDAEYRLLDGETRCEAAQRQMFSGFDFHIGSAAFGSDISALQQALRQFHHHYYRAPLWLQGPQSLEQLHALAQRYGGGLPSGSETLPPLAAG--QDYTLSLPAPQLRLVFTLPHCWLRRLERLLRLRAHAWGDARCGENSALLSFIFTVNSEWLQALNALTPGQLAHFQLDFHRLLDQLRARALGLPP--TE----------QHDDWTRQ-----LAMLMAAPRLAVLPEGGGETLGPFVGA-AL---TPTVEPFRFFSASAALAGQAPLRHLHPAQPVLLLPSSHGAQACGLQAALRAGHLSVERHQGVWLLQLAGSHGLICHGLNV--VNALTAQPPAIAIRRLLAHATLVGGDGELKRRL-SHLLYDFPYAITAEPQRLHPPVTLTGEHALLQFYPLQSDAEGRWALRVLARLRERNVGYVVQCTFHRTHVGLLFALTFTAELTDEFLQQMHHELT-------HVSVGELEQTQQALQQN- | |||||||||||||
6 | 6b03A | 0.08 | 0.07 | 0.91 | 1.32 | MAPalign | EGTLANGFRYTLGPKTRVDIRLIVDVGSIDEKDNESGVAHMVEHMVFRASDAFPQGVNAVTNYERTMYMMSPPKGNLDLGATLQALSQMTG------HAKLLQSDLDDERKIILEEWERMNQQRVQAIRHDSRYPSRPVIGTEESINDTP---ASVLQDFYQRWYHPNMRLMIIGDIADAEREIQRYFAALPNVAVPTRDYYEPLLRLQDSQSGSSQVSFVYRFNDMSAVTRQVRRQKAESLVVRKSDIKTTAALGFFAGGHDAAISAVLKEIKRYPLNEQDITEITSDIREVAQRMSQRGKDALGEDVNRHWQRWDAISKLQKQWALKTFAAQKVEQWQLSNG------------DRVVWLRAP-----------------EAGKKVYLTATSQGWQAQLASQLVNKEKTLSLSIDQEADQLTLSGTAPASLFGLYRELNVAPGIDPDVMKESMMSLARQKAWQQPEIAELKKIAPALLSQWHKAASAPVTTIPRQPANVEPRADILTWSFTPHVQVSIARNIASKYLKGIYRMRVDSELEKQRIETEVSFTSAWTLAEQAFSMSAKLYNPRVLYITL----------------- | |||||||||||||
7 | 3hdiA1 | 0.19 | 0.06 | 0.33 | 1.31 | HHsearch | TMTLDNGVRIITEKMSTRSVSIGIWGTGSRYESAEENGISHFLEHMFFKGTNIGGQVNAFTSKEYTCYYAKVLDDH--AGQAIDTLSDMFFHS------TFQKEELEKERKVVFEEIKMVDDTDIVHDLLSSATGKHSLILGTVETLNNEGMLRHYMDR---FYTGDYVVISVGNVHDELIDKIKETFSQVKPTTYNYQGEKPMFL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
8 | 6b03A | 0.11 | 0.10 | 0.96 | 1.20 | FFAS-3D | --TLANGFRYTLLEGPKTRVDIRLIDVGSIDEKDNESGVAHMVEHMVFRASDAFPSYNAVTNYERTMYMMSPPKGNLDLGATLQALSQMTGHAK------LLQSDLDDERKIILEEWRGVAERMNQQRVQAIRHDSRYPSRPVIGTEESINDTPSVLQDFYQRWYHPSRLMIIGDITADAEREIQRYFAALPNVAVPTRDYYEPLLKPQLKVAQSGSSQVSFVYSEYRHRLLTQITMSAVTRQVKSDIGKTTAALGFFANNEQDITEITSDIREVAQRMSVTPETREFADWVQQLTI-VWQQDRPYVGSQQRGKDALEALEDVNRHWQRWLASPDTLAQFPGADRVVWLRAPEAGKKVYLTATSQAGFMATAMNPWQAQSQLVNQSGPAT-----WSGESLSNWKK--EKTLSLSIDQEADQLTLSGTAPTEQLASLFGPDVMKANDDQSVGGKRASEMTKLRFGEPSAPALLSPATQLLPQVERYLATIPRQPASAINVEPRADILTWSFTPHAWTPQVQVSIARNIDDALGIYRMRELEDKKQRIETVSFTSAPERAQELWTLAEQAFSE---LPTKITQQDVDEQKAQFI--- | |||||||||||||
9 | 3amiA | 0.14 | 0.09 | 0.64 | 1.19 | HHpred | ETTLPNGLKVVVREDHRAPTVHMVWRVGSMDETTGTTGVAHALEHMMFK-GTKDVRDNAFTTRDYTAYYQQVPSS--RLSDVMGLEADRMANL------VVDDELFKKEIQVIAEERRWRTDRSKAYEALMASYVAHPYVIGWMNDIQNMT--AQDVRDWYKRWYGPNTVVVVGDVEHAVFRLAEQTYGKLARVEAPAQQGEPQQAGVR---------------------------------RVTVKAPAELPYLALAWHVPAIV--------DL-------D-KSRDAYALE--I---------L----------AAVLDYDGARMTRQLVRGNKHAVSAGAGYD----SLSRGQGLFILEGVPSKGVT-----IAQLETDLRAQ------------------------VRD--IAA--K------GVTEAELSRVKSQMGK-VYEQDSLMGQATQ-IGGLEVLGLSWRDDDRFYQQLRSVTKAAAARLLTDDTLTVANLVPLP------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6ofsA | 0.10 | 0.09 | 0.90 | 1.29 | MAPalign | TGQLDNGLRYMIHPKDQVNLWLQIHTGSLQEEDNELGVAHFVEHMMFNGTKTWPGNVNAYTSYDETVYQVSLTTQKQNLQQVMAIFSEWSN------AATFEKLEVDAERGVITEEWWRTSQARRPFL---LANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQPNMTFIVVGDSKEALALIKDNLSKLPANKAAENRVWPTKAEINDKENRVNGIALYYRLPMWSMLVQLFNQRLQEGGTARSVIAPDYQSLFFRVNAMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWLKRLWQQITVQSLAEKWQAILALEKEYAISSKETLAENLTSLTLSNG---------------ARVILAK---------------SAGEEQKLQIIAVSGELSSSSLKRWSAENSV-TMSSKVSGMNTLLSVSAREPGFQLINQRITHSTINDNIWASLQNAQIQALKTKLLQENQIAQFAADALAADRQLFSSPTRYLGSIKHSDSPVAQVSQWKRYDSAFNVALAKDLRNIREQAYSVSSRLSVDAKDISHLLAFTCQPTLANEVMVKRSHPVNTYTGVLLP----------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |