>PF03402 (265 residues) KLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIYLHRLLRG LALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVT PNLTSEDFMYVTQSCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQ AQHLRSTSLSSKASPEQRATRTIMLLTSLFVVLYILERVVFQSRLKFKDCSVFYFVHIIM SHSYATVSPFVFICTEKHIIKFWES |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIYLHRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVTPNLTSEDFMYVTQSCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVLYILERVVFQSRLKFKDCSVFYFVHIIMSHSYATVSPFVFICTEKHIIKFWES | |||||||||||||||||||
1 | 5zbhA | 0.12 | 0.11 | 0.98 | 1.33 | DEthreader | IILKQKERNVTNILIVNLSFSDLLVAIMCPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPR---GW-R-PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTEPFQN-VTLDDKYVCFDQFSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEMLIWDAYDNKYSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNIAHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQF | |||||||||||||
2 | 5zbhA | 0.11 | 0.11 | 0.98 | 1.33 | DEthreader | IIIKQKERNVTNILIVNLSFSDLLVAICLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPR--GW--R-PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFNVTLDKDKYVCFDQFPSDSHRLYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEMLIWAYDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDNIIAHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQF | |||||||||||||
3 | 4rnbA | 0.10 | 0.10 | 0.94 | 3.71 | HHpred | -WKNHHMRTVTNYFIVNLSLADVLVTIT-CLPATLDITETWFFGQSLCKVIPYLQTVSVSVSVLTLSCIALDRWYAIHP----------STAKRARNSIVIIWIVSCIIMIPQAIVMECSTVF----KTTLFTVCDERWGGEIYPMYHICFFLVTYMAPLCLMVLAYLQIFRKLWCRQGIDCSFWNESRSKQIRARRKTARMLMVVLLVFAICYLPISILNVLRVFGMDVYAWFTFSHWLVYANSAANPIIYNFLSGKFREEFKA | |||||||||||||
4 | 4grvA1 | 0.10 | 0.09 | 0.91 | 0.57 | DisCoVER | -SL----QSTVHYHLGSLALSDLLILLLAMPELYNFIWHHPWAGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTL--MSRSR-TKKFISAIWLASALLAIPMLFTMGLQN-RSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVI---SILNTVIANKLTV-MS--------GSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYFDFYHYFYMLTNALAYASSAINPILYN-LV--SANFRQ- | |||||||||||||
5 | 5nddA | 0.15 | 0.14 | 0.96 | 0.17 | MRFsearch | -LFRTKKKAPAVIYMANLALADLLSVIWFPLKIAYHIHNNWIYGEALCNVLIGFFYANMYCSILFLTCLSVQRAWEIVN----PMGHSRKKANIAIGISLAIWLLILLVTIPLYVVKQTIF-----IPALQITTCHDVLPVGDMFNYFLSLAIGVFLFPAFLTASAYVLMIRALADLEDNWETLNDNYLENSEKKRKRAIKLAVTVAAMYLICFTPSNLLLVVHYFLSHVYALYIVALCLSTLNSCIDPFVYYFVSHDFRDHAKN | |||||||||||||
6 | 6ko5A2 | 0.09 | 0.09 | 0.97 | 1.94 | SPARKS-K | VSRFRELRTTTNLYLSSMAFSDLLIFLCMPLDLVRLWQYPWNFGDLLCKLFQFVSESCTYAKVLTITALSVERYFAICPLR----AKVVVTKGRVKLVIFVIWAVAFCSAGPIFVLVGVEHEQGTDPWDTNECRPTEFAVRSGLLTVMVWVSSIFFFLPVFCLTVLYSLIGRKLWRRR---RGDAVVGASLRDQNHKQTVKMLAVVVFAFILCWLPFHVGRYLFSKFEPSQYCNLVSFVLFYLSAAINPILYNIMSKKYRVAVFR | |||||||||||||
7 | 4grvA | 0.09 | 0.09 | 0.97 | 0.66 | MAPalign | -LARKSLQSTVHYHLGSLALSDLLILLLAMPVELYNVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAIC--HPFKAKTLMSRS-RTKKFISAIWLASALLAIPMLFTMGLQNRSADGTH-PGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTNRAKRVITTFRTGTWDAYQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISFYHYFYMLTNALAYASSAINPILYNLVSANFRQV--- | |||||||||||||
8 | 4grvA | 0.10 | 0.10 | 0.97 | 0.39 | CEthreader | TLARKSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAK---TLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHP-GGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQV--- | |||||||||||||
9 | 4n6hA | 0.12 | 0.12 | 0.95 | 1.28 | MUSTER | IVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCPVKALDF----RTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPS----PSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVR------LLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQ | |||||||||||||
10 | 6kp6A | 0.08 | 0.08 | 0.96 | 1.43 | HHsearch | IKVNRQLQTVNNYFLFSLACADLIIGAF-SMNLYTTIKGYWPLGAVVCDLWLALDYVVSNASVMNLLIISFDRYFCVKPLTYP----ARRTTKMAALMIAAAWVLSFVLWAPAILFWQFVVGKRT----VPDNQCFAQFLS--NPAVTFGTAIAAFYLPVVIMTVLYIHIYLASRSRVHGIDCSLPILKSQMAARERKVTRTIFAILLAFILTWTPYNVMVLVTFCQSIPDTVWSIGYWLCYVNSTIRPACYALCNAEFKKTFRH | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |