>PF03354 (478 residues) EFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYV ASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVD GKDPTVVILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRI LNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKG TSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGF IFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVID FIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWV ADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVVILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHE | |||||||||||||||||||
1 | 4idhA | 0.05 | 0.03 | 0.64 | 0.83 | DEthreader | SINPIFEPF-IEA-------HRYKVAKGGRGSGKSWAIARLLVEAARRQ----PVRILCARELQNSISDSVIRLLEDTIEREGY-----SAEFEIQRSMIRHLGTNAEFMFYGI-KNNPTKILIDICWVEEAEAV-TKESWDILIPTI-RKPFSEIWVSFNPK-NILDDTYQRFVV--NP-----PD-DICLLTVN---------------YTDNPH----F-PE-VLR-LEMEECKR--RNPTLYRHIWLGEPVSAS----DMA-IIK--W---------------L----EAATD-----------------AH-K--------------------------KL----------GWK--A------------KGAVVSSRHG-VV-----------GADHYLWDGATMFKGSNKRAQFYYALADRYLYRVMLLFELTQITKVMK--PSPNLA------D--AL-MMC-MHCPALVP | |||||||||||||
2 | 4idhA | 0.07 | 0.04 | 0.65 | 0.83 | DEthreader | EPFIEAHRY---------------KVAKGGGSGKSWAIARLLVEAARPVRI----SISDSV---------RL-LEDTIERE-G-----YSAE----------FEIQRSM---------------MFY----------------GIK-NN--KI-CWVEEA---------E--AV--TKESWDI-LIPTIIWVSTYFVVN--------P-DDICLLT--------D------------------TLYRHIWLGEPVSASDMAIIKREWLEAATDAHKWKAKGAVVSAHDPSDGPDAKGYASRHG-----SVVKRIAEGL--------------------------------LMDINEGADWATSLAIE-D-G-ADHYLWDGGVGAGLRRQTTEAFSKITATMFKGSENKRAQFYYALADRLYLTMLSFDKLEKLFAELTQIQRKFNNNKLELMTKMLGIPSPNLADALMMCMHCPALVR | |||||||||||||
3 | 4idhA | 0.08 | 0.06 | 0.80 | 3.57 | HHpred | PIFEPFI-E----------AHRYKVAKGGRGSGKSWAIARLLVEAAR-R----QPVRILCARELQNSISSVIRLLEDTIEREG-----YSAEFEIQRSMIRHLGTNAEFMFYGNNPTKIKSLEIDICWVEEAEAVT-KESWDILIPTIRK-PFSEIWVSFNPKNI-LDDTYQRFV------VN--PPDDICLLTVNY-------------TDNPHFPE----V-LRLEMEECK------RRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKWKAKGAVVSAHDPSDTPDAKGYASR-H--GSVVKRI-AEGL----------------------------------LMDINEGADWATSLAIE--DGADHYLWDGDGVAGLRRQTTEAFKKITATMFKGSESNRAQFYYALADRLYHGELSFKMLEKLFAELTQIQRKFNNNGKLELMTKLGIPSPNLADALMMCMHCPALVR | |||||||||||||
4 | 5oe8A | 0.12 | 0.10 | 0.80 | 1.36 | DisCoVER | PFSKKQLKVLTWWRKAPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMD-TF--NEQNFGMAGKTIGALRNVITPLKRMLKS-----RGY--RVKDHDNYLTITFKTNYFYLFGGKDESQIQITLAGMFFDEVALMPE-SFVNQATARC-SVDGAKLWFNCNPAGPYHWFKVEYLDKLDE--------KNLLHLHFTM---------------DDNLSL--SKQVKERYQ--RM-------YKGVFYQRYILGLWVLA-EGIIY-D-MFDEHVVPTVPRPYEKYYVSCDYG-TQNPTTFGLWGLY-NGVWYKVEYHYDGRK----------------------------ENKQKTDQEYYEDLMKFIEDIEKKFKGVIVDP-SAASFIALLRQK--GIKVIKA-K----NLDGIRNVATALNKKMILYNDCKETFREYSSYVWDEAERGEDKPVKQ----NDHQLDADRYFVNTIF--- | |||||||||||||
5 | 3ezkA | 0.11 | 0.09 | 0.82 | 0.78 | MRFsearch | DYQRDMLKIMSS--------KRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL--QPGIVEWNKGSIELD-NGSSIGAYASSPDAVRGNSFAMIYIDECAFIPFHDSWLAIQPVISSGRRSKIIITTTPNG--LNHFYDIWTAAVEG------KSGFEPYTAIWNS-----VKERLYNDEDIFD--DGWQWSIQTING---------SSLAQFRQEHTAAFEGTS-GTLISGMKLAVMDFIEVPEPDRKYIATLDCSEGQDYHALHIIDVTD-DVWEQVGVLHSN---------------------------------TISHLILPDIVMRYLVEYN--ECPVYIELNTGVSVAKSLYMDLESYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIH-HRATIQEFRTFSEKG-----VSWAAEEG-YHDDLVMSLVIFGWLSTQ-- | |||||||||||||
6 | 5oe8A | 0.12 | 0.10 | 0.82 | 1.40 | SPARKS-K | KKQLKVLTW--WRKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMDTF---NEQNFGMAGKTIGALRRNITPLKRMLKSRG-----YRVKDHRADNYLTITFKTNYFYLFGKDESSQQGITLAGMFFDEVALMP-ESFVNQATARCS-VDGAKLWFNCNPAG-PYHWFKVEY--LDKLDEKN-----LLHLHFT-------------MDDNLSLS-------------KQVKERYQRMYKGVFYQRYILGLWVLAE-GIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGT-QNPTTFGLWGLYNG-VWYKVKEYHYD------GRKENKQK---------------------TDQEYYEDLMKFIEDIEHKFKGVIVDPS-AASFIALLRQKGIK--VIKAKNDV---LDGIRNVATALNKKMILYNDCKETFREYSSYVWDEKERGEDKPVKQN----DHQLDADRYFVNTILFG- | |||||||||||||
7 | 4idhA | 0.08 | 0.06 | 0.79 | 1.53 | MAPalign | --INPIFEPFI-------EAHRYKVAKGGRGSGKSWAIARLLVEAAR-----RQPVRILCARELQSDS--VIRLLEDTIERE-----GYSAEFEIQRSMIRHLGTNAEFMFYGIKPTKIKSLGIDICWVEEAEAV-TKESWDILIPTI-RKPFSEIWVSFNPK-NILDDTYQR---FVVNP-----PDDICLLTV-N-----------Y-TDNPHF---------PEVLRLEMEECKR--RNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHWKA-KGAVVSAHDPSDTPDAKGYASRHG-----SVVKIAEGL----------------------------------LMDINEGADWATSLAIE--DGADHYLWDGDVGAGLRRQTTEAFKKITATMFKGSRNKRAQFYYALADRLYDDMLSFDKLEKLFAELTQIQRKFNNNGKLELMMKLGIPSPNLADALMMCMHCPALV- | |||||||||||||
8 | 5oe8A | 0.12 | 0.10 | 0.83 | 1.31 | CEthreader | KKQLKVLTWWRKA--SPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMDT---FNEQNFGMAGKTIGALRRNV--ITPLKRMLKSRGYRVKDHRADNYLTITFKGKTNYFYLFGGKQDLIQGITLAGMFFDEVALMP-ESFVNQATARCS-VDGAKLWFNCNPAGPYHWFKVEYLDKLDEKN--------LLHLHFTMDDNLSLS--------------------------KQVKERYQRMYKGVFYQRYILGLWVL-AEGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGT-QNPTTFGLWGLYNGVWYKVKEYHYDGRKEN----------------------------KQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFIALLRQKGIK-----VIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGED-KPVKQNDHQLDADRYFVNTILFG- | |||||||||||||
9 | 5oe8A | 0.13 | 0.10 | 0.82 | 1.12 | MUSTER | KKQLKVLTWW--RKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMD---TFNEQNFGMAGKTGALRRNVITPLKRMLKSRG-----YRVKDHRADNYLTITGKTNYFYLFGGKQDLIQGITLAGMFFDEVALM-PESFVNQATARC-SVDGAKLWFNCNPAG-PYHWFKVEYL-------DKLDEKNLLHLHFT-------------MDDNLSLS-----KQVKERYQRMY--------KGVFYQRYILGLWVLA-EGIIYDMFDQDEHVVPTVPRPYEKYYVSCDYGTQ-NPTTFGLWGLYNGVWYKVKEYHYDGRK----------------------------ENKQKTDQEYYEDLMKFIEDIEKKFKGVIVDPSA-ASFIALLRQKGIK-----VIKAKNDVLDGIRNVATALNKKMILYNDCKETFREYSSYVWDEAERGEDKPVKQND----HQLDADRYFVNTILFG- | |||||||||||||
10 | 4idhA | 0.08 | 0.06 | 0.80 | 3.55 | HHsearch | PIFEPFI----E-------AHRYKVAKGGRGSGKSWAIARLLVEAAR-R----QPVRILCARELQNSISSVIRLLEDTIEREG-----YSAEFEIQRSMIRHLGTNAEFMFYGNNPTKIKSLEIDICWVEEAEAVT-KESWDILIPTIRK-PFSEIWVSFNPKNI-LDDTYQRFV------VN--PPDDICLLTVNY-------------TDNPHFPE----V-LRLEMEECK------RRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDALGWKAKGAVVSAHDPSDTPDAKGYASR--H-GSVVKRI-AEGL----------------------------------LMDINEGADWATSLAIE--DGADHYLWDGDGVAGLRRQTTEAFKKITATMFKGSESKRAQFYYALADRLYHGELSFKMLEKLFAELTQIQRKFNNNGKLELMTKLGIPSPNLADALMMCMHCPALVR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |