>PF03339 (315 residues) NNRYQDKHYEKNVANKPRKETNESTKTCGYEDFITQRLHLHERESRDLECNAIVVNCMLK QAGKEETECWIELSSLVRYKKALGFPLLRGYKQFSYGKMLYFEQFKYTTVEKLTPQTLCI TDAILFQIVVILYSMYKKEIYADEFVFELVTIPRSTFHISVNQLVFDTCTDKLVVLSLCT RPYKAKLPQSCYLNYIHWFNTTAKKSYETSNYFFEWLIKNHLRYLHKDGVDLFKIRKRTV SGPRINRFIDPGTVVLVARDDMFVAGVTLTNVSISDNVRILFSLDGGNILEIDDFSIYDV YSHGEFFIRSQLTSI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | NNRYQDKHYEKNVANKPRKETNESTKTCGYEDFITQRLHLHERESRDLECNAIVVNCMLKQAGKEETECWIELSSLVRYKKALGFPLLRGYKQFSYGKMLYFEQFKYTTVEKLTPQTLCITDAILFQIVVILYSMYKKEIYADEFVFELVTIPRSTFHISVNQLVFDTCTDKLVVLSLCTRPYKAKLPQSCYLNYIHWFNTTAKKSYETSNYFFEWLIKNHLRYLHKDGVDLFKIRKRTVSGPRINRFIDPGTVVLVARDDMFVAGVTLTNVSISDNVRILFSLDGGNILEIDDFSIYDVYSHGEFFIRSQLTSI | |||||||||||||||||||
1 | 5oikZ2 | 0.05 | 0.03 | 0.61 | 0.72 | DisCoVER | ------------------------------------EHNFQP------------GDNVEVCEGELIN-----------------LQGKILSV-DGNKITIMPKHEDLKDMLEFPA--------------------------QELRKYFHVKVDTGLIVRVEENFVILFSDMHELKVLPRDLQLCASEWGELV-----------QLDPQTVG------VI--V-RLERETFQVLNMYGVAL-DSENNI--HVKDIVKVIDGPHSGREGEIRHL-FRSFAFLHCKLVENGGMFVCKTRH--L--V--LANELIGQT- | |||||||||||||
2 | 4a01A | 0.07 | 0.05 | 0.68 | 0.67 | DEthreader | ----------DHNVVKCAEQNSTKIYAAFSG--MGFLLAANGLLVLYAILFEAITGYGLGGSSMALFRDLFGSY-------------------LIVSSGICTLKKQLVITVLMGVAVVSFWFLVAVGLWAGLIIGFTET------------VS-TFAAMYG--IAVAA----LGMLSTIATG-------LVSLALFGAFVSSITTVDVLVFLI-GA--P--------------VMLTPLVV-GILF----------GV---ETLSGVGSSGITSG-SLILIKL----MAVES--------VFAPFFATHGGLLKI | |||||||||||||
3 | 6cv7A | 0.07 | 0.07 | 0.99 | 0.57 | CEthreader | ----YDDDWQYEDCKLARGGPPATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVGTVIYHEVRIVVRDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANRRTTTTTLTVDVLFLPCVLVPNTRDCRPLTYQAAIPELRTPEELNPILVTPPIQADRPGILYSILVGTPEDYPRFFHMHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGH | |||||||||||||
4 | 6pasB | 0.07 | 0.06 | 0.87 | 0.60 | EigenThreader | GKTFFEFCQDSGYDKILQVLGATPRDFLQNLDGLHDHLGTLRCTERPEDGAL------VLHYYEHIVIGIVKTVASKLH--NTEVKVEILKTKEECDHVQFLITCKITDVLDTVRPHLEMTFANVLAY-----------------VLKTRLKGQMLYIP--ETD--VVVFQCYPSVTNLDDLTRRGLCIADIPLHDATR----DLVLMSEQFEADYKKQKTDRLLYSVLVTLLFSGIVGPNVYKVETVGDKYMAVVDPVGIT--IGIH------SGEVVTGVIGHRMPRYCLFGNTVNLTSRCETTGVPGTINVS | |||||||||||||
5 | 4ii1A | 0.17 | 0.07 | 0.40 | 0.34 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------VSAPYYTL-EYHNAMVVGTEEAAGVRVLYLYPTHKSLKPCPFFLE------GKCRFK-ENCRF-------SHGQVVSLDEL------RPFQDPD--LSSLQAGSACLAKHQDGLWHAARITDVD-NGYYTVKFDSLLLAVVEGDG-----ILPP------------ | |||||||||||||
6 | 6f3hA | 0.11 | 0.08 | 0.69 | 0.47 | MRFsearch | ----------------------------------------------------DKVDSILNGKQKKQLELLHTLATKLLHKRIHDNAVVFGDG--FNKGLVSLSPDDELCIPTFYDKSTLLVSEFILTNKLCAAFFQENKI---PGVYRCYN----PSLKDITKISSQL---SSSFYSPFPTAYLTVFKQEYLDQYVWSFQARADILKIFQRHSSTYWTLKHLEQS----GKTHDVIVTSV--------PQNGTVNCLFPEYSYARGTLKLDPDTIRHCKVESIHPLDGILTLTH--------------------- | |||||||||||||
7 | 2ej9A | 0.13 | 0.08 | 0.63 | 0.47 | FFAS-3D | -----------------------------------------------------------------------TNDYAKELAKEGKRNFIVLADKQNNGKGLYFS---------MVLDSKLYNPKVINLLVPICIIEVLKNYVDKELGLDIM-VKVNDNYKKLGGILTELTDDYMIIINVNNQ------IRNEIREIAISLKEITGKELDKVEILSNFLFESYLEKLKNKEIDDYEILKKY-----KKYSITIGKQVKILSNNEIITGKV---YDIDFDGIVLGTEKGGICIHV----------------------- | |||||||||||||
8 | 4r04A3 | 0.12 | 0.10 | 0.87 | 0.62 | SPARKS-K | YSEHITKEISTIKNSIITDVNGQLDHTSQVNTLNAAFFIQSLIDYNKDVLNTSVKVQLYAQLFSTGLNTIIQLVNLISNAVNDTINVL---PTITEGI------PIVSTILDGI------------NLGAAIKELLDEGVLAIAEDINVFMKDDINTITGKYSIDFSISLVKVNGLYLN---------ESVYSSYLDFVKNSDGHTSNFMNLFLDNIS--FWKLFGFENIN-FVIDKYKTNL---------GYVEFICDNNKYFGEWKSTIFSGNGRNVVVEPIYNSTSLDFSYLYINKVLIAPLININTNYYSN | |||||||||||||
9 | 4fltA | 0.12 | 0.07 | 0.58 | 0.74 | CNFpred | -------------------------------DYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGRQYIDLVRRELESRGFKVLYID-----TDGLYATIP-GAKHEEI--------KEKALKFVEYINSKLPGLL---ELEYEGFYA---RGFFVTKKKYALIDEGKIVTRGLEIRRDWSEIAKETQAKVLEAILKHG------NVDEAVKIVKEVTEKLSKYEIPKLVIYEQI---------------------------------------------------------------------------- | |||||||||||||
10 | 2zxqA | 0.07 | 0.05 | 0.77 | 0.67 | DEthreader | -----SSNTQKPGDTSDYTTVYALASMAVAAYRDIMNNPYKS--EDSWETRKMSKMINDNGWR------------------------DSTFQHWAADLKGENEVMRFLRNDSWVGDYGGYNMLYHDVKFHWMWDSFTGKLVKD-KLYHWNTKG--LTDQGK------------------KV-LTADAETPYV-VYKGEAK-------------QI--QV-NWS-EGMHVDAGFNVEMLRLTGKVDVSQRLTLYVGVDNRSTGDASV-TVT-SGGKVLATNSTSIAQNMYVFFT-ATVTLSHKHTYFDDRQGIWHL | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |