>PF03239 (313 residues) VAVFFVVFRECLEAVIVISVLLSFLKQAIGEHDRALYRKLRIQVWIGVLLGFIICLAIGA GFIGAYYSLQKDIFGSAEDLWEGIFCMIATVMISMMGIPMLRMNKMQSKWRVKIARSLVE IPHRKRDYFKIGFLSRRYAMFILPFITVLREGLEAVVFVAGAGITTQGSHASAYPLPVVV GLICGGLVGYLLYYGASKSSLQIFLILSTSILYLISAGLFSRGAWYFENYRFNLASGGDA SEGGDGNGSYNIRKAVYHVNCCNPELDNGWDIFNALLGWQNTGYLSSMLCYNIYWLVLII VLSLMIFEERRGH |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VAVFFVVFRECLEAVIVISVLLSFLKQAIGEHDRALYRKLRIQVWIGVLLGFIICLAIGAGFIGAYYSLQKDIFGSAEDLWEGIFCMIATVMISMMGIPMLRMNKMQSKWRVKIARSLVEIPHRKRDYFKIGFLSRRYAMFILPFITVLREGLEAVVFVAGAGITTQGSHASAYPLPVVVGLICGGLVGYLLYYGASKSSLQIFLILSTSILYLISAGLFSRGAWYFENYRFNLASGGDASEGGDGNGSYNIRKAVYHVNCCNPELDNGWDIFNALLGWQNTGYLSSMLCYNIYWLVLIIVLSLMIFEERRGH | |||||||||||||||||||
1 | 6kkiA | 0.07 | 0.06 | 0.95 | 1.03 | SPARKS-K | VTLAVAAFIFNTTEFVPVGLLSDIAQSFHMQMSLPFMLMTSKLLICLFVVFIASHVLSFLIFWSITASLAIRMAAQALSLIATGTALAMVLGLPLGRIVGQYWRMTFFAIGIGALITLLCLIKLLPSLPLLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIAG-FSANFATALLLLLGGAGIIGSVIFGKLGNQY-ASALVSTAIALLLVCLAWGIAMMIIGLGMQVKVLALAP------------DATDVAMALFSGIFNIIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTL- | |||||||||||||
2 | 3rkoB | 0.09 | 0.08 | 0.86 | 1.26 | CNFpred | LDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGAAAMKAFVVTRVGDVFLAFALFILYNELGTNFREMVELAPAHFADGN----------NMLMWATLMLLGGAVGKSAQLPLQTWLADAMAG------PTPVSALIHAATMVTAGVYLIARTH-----GLFLMTPEVLHLVGIVGAVTLLLAGFAALV-----------------QTDIKRVLAYSTM-----SQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQ | |||||||||||||
3 | 4w6vA2 | 0.07 | 0.04 | 0.58 | 0.59 | DisCoVER | RLCFILLVSAAFFWSAFEQ-KPTSFNLFANDYT-DRMIPTVWFQSINALFIILLAPVFS---------------------WAPSSITKFVIGILCAAAGFA---------------VMMYAAQHVLGGAGVSP-LW---LVMSILLLTLGELCLSPIGLATMTLLAPDRMRGQVMGLWFCASSLG--NLA-AGLIGGHV-LPTLFARCSIALVICAAVLILLI--------------------------------------------------PIRRL----------------------------------- | |||||||||||||
4 | 6kkrA | 0.11 | 0.08 | 0.72 | 0.83 | DEthreader | MMGYLPCLQNIFG--VILFLRLTWMV-G--------T-AGVLQALLIVLICCCCTLLTAISMSAIANGISRSLGPEFGGAVGLCFYLGTTF-AAAMYILGAIEILTYTST-L---SAYLEKD--KH-------ATSFTVLVGIF-FPS--VT--GIMAGSNR-SGDLRDAQKSIPVGTILAIITTSLVYSS-LFVGLAPWIVIGSFFSTCGAGLQSLTGAPRLLQAIADIIFLRVF---------------GH-GKVN-----------------------GEPTWALLLT-AL-AEL--L------------ | |||||||||||||
5 | 4gbyA | 0.12 | 0.11 | 0.91 | 0.57 | CEthreader | LVATLGGLLFGYDTAVISGTVESLNTVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG-----------RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY----------------VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL | |||||||||||||
6 | 4ldsA | 0.09 | 0.07 | 0.79 | 0.90 | EigenThreader | LIFILGALGGLGYDNGVISGALLFIHKDIPLN--------STTEGIVVSSMLIGAIVGAGSSGPLADKLGR-----------RRLVMLIAIVFIIGALIL----------------------AASTNL---------ALLIIGRLIIGLAVGGSMSTVPVYLSEMAPTEYRGS---LGSLNQLMITIGILAAYLVNYAFADIEGWRWMLGLAVVPSVILLVGIYFILIVGCIFAIFQQFIG------INAVIFYSSSIFAKAGLGEAASIL--------GSVGIGTINVLVTIVAIFVKLLVGGNIGMIASLL | |||||||||||||
7 | 3k07A | 0.11 | 0.07 | 0.60 | 0.30 | HHpred | ----DNLSGKLLEEFIVVAVVCALFLWH---------V--RSALV--AIISLPLGLCIAFIVMHFQ---GLNAN-----IMSLGGIAIAVGAMVAAIVMIENAHKLEEWQHKTRWQVITDASV-----------EVGPALFISLLIITL--SFIPIFTLEGQEGR----LFGPLAFTKTYAMAGAALLAIVVIPILMKLHWPKTT--LLVAALSVLT-----VLWPLNGGEFLPQINE--------------------------------------------------------------------------- | |||||||||||||
8 | 6li9B | 0.09 | 0.08 | 0.89 | 0.28 | MRFsearch | --PCLIIWAACGVLATLGALCFAELGTMITKAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCPQIVVKCLAAAAILFISTVNSLNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELR----NPYRNLPLAIIIGIPLVTACYILMNVSYFTLYPASWIVPLFVAFSTIGAATAGRLIYVAGREGHMLKVLS---------------------------TPAPAIIFYGIIATIYINSLVNYFSFAAWLFYGLTILGLIVMRFTR-- | |||||||||||||
9 | 3mktA | 0.08 | 0.07 | 0.84 | 0.95 | FFAS-3D | -HKIPFEVHQGLILALLVSVPIIAVLFQVEEAMATKTVGYMHAVIFAVPAYLLIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQI-ALLYVALAMQLLLFAAIYQCMDAVQVVAA-----------------------------------------GSLRGY-KDMTAIFHRTFISYWVLGLPTGYILGMTN------- | |||||||||||||
10 | 6w4sF | 0.05 | 0.04 | 0.90 | 0.99 | SPARKS-K | FLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSL-----------LLTAVYGLVVAGSVLVLGAIIGDWVDKN----ARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTM------------YHGWVLTSCYILIITIANIANLASTATAITIQRDW-IVVVAGEDRSKLANMNATIRRIDQLTNILAPMAVGQIMTFGS-PVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGPFYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSG---SILSILMGASAITGIMGTVAFTWLRRKCG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |