>PF03231 (437 residues) MSTAKNAASEFIKSYGTRDNRAVNDCYSVFTGEGVNFLNLFMHNNAGIKSAFSINDLGRN EDVKIHEAEVVDSCHDYHYFEKFGLDITFCEHEMNLIVRKPGVKNTGCKFTMHNQIFNPN SNILNMTPGTISEDAFYDRSKITSSGLLPSGWCLDECYKNNFYVATNGDLTLDYGFSVMG KTTSYWRESMSREKILSVKQKCFSDNTVPTNRLLSTSTVKGIQIGSELAFDTTVILSCKQ NLNIDLKSQYRVSFHGIQEEGAFARTFCVPFENKSRMISFYAKTVADNSNERTTLIIKVV TKTVDSHLVIPIRNHINCEKKIGARVGLVDFCDSDPNYNQLIVKNLLSVHTQFAINLSEV VQKPVIVFKMYDKELHNDYTEVSGRILNYQVDSEGNIYFLSKTLEVLPKSLSTLSYLGSI APIQWKECLEHQHFVVK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSTAKNAASEFIKSYGTRDNRAVNDCYSVFTGEGVNFLNLFMHNNAGIKSAFSINDLGRNEDVKIHEAEVVDSCHDYHYFEKFGLDITFCEHEMNLIVRKPGVKNTGCKFTMHNQIFNPNSNILNMTPGTISEDAFYDRSKITSSGLLPSGWCLDECYKNNFYVATNGDLTLDYGFSVMGKTTSYWRESMSREKILSVKQKCFSDNTVPTNRLLSTSTVKGIQIGSELAFDTTVILSCKQNLNIDLKSQYRVSFHGIQEEGAFARTFCVPFENKSRMISFYAKTVADNSNERTTLIIKVVTKTVDSHLVIPIRNHINCEKKIGARVGLVDFCDSDPNYNQLIVKNLLSVHTQFAINLSEVVQKPVIVFKMYDKELHNDYTEVSGRILNYQVDSEGNIYFLSKTLEVLPKSLSTLSYLGSIAPIQWKECLEHQHFVVK | |||||||||||||||||||
1 | 4es8A | 0.09 | 0.05 | 0.59 | 0.75 | DisCoVER | ---------------------PDDLMNFKGTWEVSADGSSGRFFSADSYVFHLIPDVKKPGWREHN--------------EVKDSYIKIDKQSIAARYKTSTT--APYSVAFKVNTKSL---IKDHDYKITFE--QGQIITVDYRIGAFTTDDSFKISDYASNVKIQGDKTISFRTLKEGPMSLVLLSKV-EKKPQGDLDV----------------EFKNL--KIIDVT----NPSQLDKGVAYVGNKNVQLTLKS--RTNFEGDEISLFNSGLLQTVTVTKDQ----QNPISITLAKLKNKEKLKVSIKQKTSKDFFFEVGIDPK-------------------------------------------------------------------------------------------------------------- | |||||||||||||
2 | 3eqnA | 0.06 | 0.04 | 0.68 | 0.67 | DEthreader | GGRCGQGCD------VSSP----V-YQTQLIGDAKNLP---------------TLLAA-PNFSGIALIDAD--------YYVNQNNF-------------------T-IHWQVSQATS--------INIVFQM---------FLGDLVFNGGNIGATNTAINA----QRITINCVGFD-LTQG-------GAQGVGAEAIIDAVVTTTFVLVLNIRIVSKSHPQ---GEVWSVDMI---QAAAGATHLII-G-LQVGCCFADFLLHLTS----GSSAYLMWVWLADHDSQQISLSGGIMSESQGPVAANHYIG----------LAQTETPQPAPFITNSNFDPSQLGQGDAWASFSNTGCQSQCQQIVNVIAFYSLTTDTTWQQGVINRNPNG-FADTIT-A--WT-RN---------------------------- | |||||||||||||
3 | 1vt4I3 | 0.05 | 0.05 | 0.94 | 0.70 | CEthreader | DEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 6vbu9 | 0.07 | 0.06 | 0.81 | 0.80 | EigenThreader | AQA-------------EDRDPILQVEVGKFVSGTEMLHLAVLHSRGNVEHGNLMQRTFGGVKGR----------DLICIQSVDGMLMVFEQESYAFGRFLPGSLLPGPLAYSSFVLGERNFFCLKDNGQ-----IQFMKKLDYSYCSVSE--------GTINTLIGN-HNTQL---PHVPVAVRVGCLHDLKGVIVTLSDDGSLFQAPKVESRELNDMELKELQKVIKNVNKDLKVSAMVS-PNSVTVKVTLKNRV--ALQK-IKLSIYVQ--PPLVLTTFEFMAPEM---TRTVGFSVYLKGSYSPPELPRVSQCKFRLPLKLVCLPG-----QPSK-----------------------TASHKLTIDTNKSPVVNVMGFRGSQVTLLASKTSQRIQSEQ-----FEDLWLITNELIIRLQEYFEKQGIKDFTCS | |||||||||||||
5 | 1h8mA | 0.14 | 0.04 | 0.27 | 0.34 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVFRS----GGEKALELSEVKD-LSQFGFQFMTFFAETVASRTGARQSIEEG-NYIGHVYA-RSEGICGVLITDKQYPVRPAYTLLKILDEYLVAHPKEWADVT-----ETDALK--MKQLDTYISKYQ-DPS------------------------------------------- | |||||||||||||
6 | 4es8A | 0.15 | 0.06 | 0.39 | 0.38 | MRFsearch | --------------------------------------------------------------------------------------------SYVFHLIPADVKKPGWREHNE---------------------------------------------VKDSYIKIDQSIAARYKTST------------TAPYSVAFKVNT----------------------------DHDYKITFEQGQISGITVDYRIGSAFISDESKYASNVKIEGEQGDKTISFRTLK-----EGPMSLVLLSKVEKKPQ---------------GDLDVEFKN----------------------------------LKIIDVTPSQLDKGVAYVGNKNVQLTLKSEGDEISLFN----------------------------------- | |||||||||||||
7 | 6upkH | 0.13 | 0.11 | 0.80 | 0.46 | FFAS-3D | ----------------MAETLEFNDVYQ--EVKGSMNDGRLRLSRQGI--IFKNSKTGKVDNIQAGELT----------------EGIWRRHGLKLLTK------NGHVYKYDG--FRESE-----------FEKLSDFFKLMEKDLCVKGWNWGKFGGQLLSFDIGDQPVFEIPLSNVSQCTT-----GKNEVTLEFHQNDDAEVSLMEVRFYVPPTQGGGGGGGGGGGGGDAICIFRELQCLTPRGRYDIRIYPTFLHTTVLRLFLLPKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGR------LTKNMSGSLYEMVSRVMKALVNRKITLERGFHKPPVHIRFDESFVNFARGTTTTRSFDFETKQGTQYTFSSIERE---EYGKLFDFVNA------------------ | |||||||||||||
8 | 4r04A | 0.12 | 0.11 | 0.90 | 0.76 | SPARKS-K | ENDGTRLLDSIRDLYPGK-------FYWRFYAFFDYAITTLKPVYEDTNIKIKLDKDTRNFIMPTITTNEIRNKLSYSFGAGGTYSLLLSSYPISTNINLSK----DDLWIFNIDNEVREISIGTIKKGKLIKDVLSKI----------------DINKNKLII---GNQTIDFGDIDNKDRYIFLTCELDDKISLIIEINLVAKSYSGDKNYLISNLSNTIEKINTLGLDSKNIAYNYTD-ESNNKYFGAISKTSQ------KSIIHYKKDSKNILEFYNEFNSKDFIAEDINVFMKTGKYYVDNNTDKSIDFSISLVSKNQVKVNGLYLN-------ESVYSSYLDFVKLFLDNIWKLFGFETLVGKICDNNKNIDEWKTSSSKSTIFSGNGRNVVVEPIYPDT-GEDISTYEPLYGINKVLIAPDLYTSLININ | |||||||||||||
9 | 3hfqA | 0.09 | 0.06 | 0.71 | 0.71 | CNFpred | ---------------------MQERILFGTYTKTSQGIYQGTLDTKTLTNDGLLAAT-------------------------NPTYLALSADCLYSVDKE--------DDEGGIAAWQIDGQTAHKLNTVVAP------------GTPPAYVAVDEA-RQLVYSANYHK----------GTAEVMKIAA--DGALTLTDTVQHS--GHGPRPEQDGSHIHYTDLTRLAVIDSDKVYVYNVSDAGQLSEQSVLTME----AGFGPRHLVFSP--DGQYAFLAGEL------SSQIASLKYDTQ----TGAFTQLGIVKTIPDYTAHNGAAAIRLS---GHFLYVSNRG--------------YNTLAVFAVTAHLTLIQQISTEGFPRDFDLDPTEAFVVVVNQNT--------------DNATLYARDLTSGKLSLL | |||||||||||||
10 | 5a22A | 0.06 | 0.05 | 0.72 | 0.67 | DEthreader | NSQGYSFLHEVDKEAE-YIKKERWTFLACFHTLKDGMQVLMVCR--NLFSEQIFSLLYISHLTKRWSRVTCVIPTCA-IMS-VSTNALTVAHFANAMYNYTSYYSLSRIAFGSKTSE--------PWERESKVPLIKR---ATRLRDAIWFKRTGSALH-R-F----STSRMS--H---------------------GGFASQSTAALLMATTDMRGF-VGCIGLYGDLAYRKLMASCCVPANYGLIIDLSFLSLTRSGPIRDEL-------------TIPHKIPTSYPTSNMGVRFQCLIEKGK--YR--SH-YSQLWFSTL--------SGS---------MLQIFGVPTGVSHAAALKDRIFAIISYYNINHIRVG--------K--IFNQLRTVDN----------------ILMLKSD-------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |