>PF03225 (509 residues) SPIVDEFLKFFFKRSDVSNQKRQLCEYLLKNSATENRNTYRANAGNKMISFDSNYRVSNG VVFIDDTSDLELLKLAIIYMYRVDRSLLKKTNYRPENFFASLDWRRSSREFSPFYSGDMN DYLAANNEIGCTYTEKDIKDHYPNISELRALTLYRVCNSLGKYIDLKTLESGSVKGFSIS TSAEDGGIGEGLTANKLFSECLKIFRVYLSLSTTKAGIAKISVNKRYFETFFTSLDSHSD LSKLKSNPLVIAFFINSFDKLTVDSTGFKDNFRAIKQLEKPFRKFLKDVFLIDSSFSEET LFINLPKTSVSEILQEPTMVSEFVRKDDSISLESVANTLPDSTDNSVTEWIHTFLARKGD IPKHRLTDALLFILGRYTTNIKRLVQPNDVGITIEGKRVTFKMSELNSFVVNRSVRNYPE LKGINVLRQWANKRSYRALTLFRSANFDPGLFSNVPGILPYMRFDFYKAIPLSQMSQQEV ESFRTLRLVTEAKSDASASSISDCKQWIL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SPIVDEFLKFFFKRSDVSNQKRQLCEYLLKNSATENRNTYRANAGNKMISFDSNYRVSNGVVFIDDTSDLELLKLAIIYMYRVDRSLLKKTNYRPENFFASLDWRRSSREFSPFYSGDMNDYLAANNEIGCTYTEKDIKDHYPNISELRALTLYRVCNSLGKYIDLKTLESGSVKGFSISTSAEDGGIGEGLTANKLFSECLKIFRVYLSLSTTKAGIAKISVNKRYFETFFTSLDSHSDLSKLKSNPLVIAFFINSFDKLTVDSTGFKDNFRAIKQLEKPFRKFLKDVFLIDSSFSEETLFINLPKTSVSEILQEPTMVSEFVRKDDSISLESVANTLPDSTDNSVTEWIHTFLARKGDIPKHRLTDALLFILGRYTTNIKRLVQPNDVGITIEGKRVTFKMSELNSFVVNRSVRNYPELKGINVLRQWANKRSYRALTLFRSANFDPGLFSNVPGILPYMRFDFYKAIPLSQMSQQEVESFRTLRLVTEAKSDASASSISDCKQWIL | |||||||||||||||||||
1 | 5dlqB1 | 0.12 | 0.10 | 0.83 | 1.05 | FFAS-3D | -AQLENAAKVLMAPPSMNEQRQHAEHIFLS--FRKSKSPFA----------------VCRHILETSKVDYVLFQAATAIMEAVVREWVLLEKGSIESLRTFLTYVLQRPNLQKYVREQILLAVAVDKSIDCKSIFHEVSQLISSGNPTVQTLACSILTAL-----LSEFSNCKRV-------------FQEEDLRQIFMLTVGVLQEFSRRENLSAQMSSVF--QRYLALANQVLSPTESWREALLDSRVMELFFTVHRKIREDSDMAQDSLQCLAQLAGSQVDYLAHFIE-----GLLNTINGIEIED-----SEAVGISSIISNLITVFPRNVLTAIPSELFSSFVNCLTHLTCSKDDMVYMEAYDKLLESWLTLVRL------------------FLATRHFLKLVFDMLVLQNTEMTTAATLVCLYQAEYSELVETLLSSQQ-DPVIYQRLADAFNKLASS----------TPDRKQKMAFLKSLEEFMAN---------VGGLL | |||||||||||||
2 | 2x19B | 0.09 | 0.07 | 0.85 | 1.18 | CNFpred | RVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEE-----------------------------PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-SNVQLADTVMFTIGALSEWLADHPVM-INSVLPLVLHALGNLSVSSVSTLKKICRECKYDLYAANIVAVSQDVLMKQIH-----------KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEINPSNKLAIVHILGLLSNLFTTLDISH-VLQQVFQLIQKVL-AVCAIFEKSVKTLFAPMVPQLCEMLGMYSTIPQASALDLTRQLVHIFA--HEPAHFPPIE-ALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK---------PDLFL---CERLDVKAVFQCAVLALK---------FPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKH-------CFSLLSMWIK | |||||||||||||
3 | 4fgvA | 0.07 | 0.06 | 0.92 | 0.54 | DisCoVER | ---HFYLIRISQIDEIFICLDYWLKLVQE-LYEEMQSLPLNDMSSMGLGMMSGGGAPIEKMVRPEEVQLYKTIRECVYLTHLDVVDMEQIMTEKLARQVEWSWHNCNVLCWAIGSISMAM-NEETEKRFLVTV-IKDLLGLTAVVASNIMYIVGQYPRFLKWLKVVNKLFFMHACFIIACRRHFPFIITCDLTPQVHTFYEA-CGYMVSAQGNRNQQERLLAELMAIPNAAWIILHEPDTIIGNIMKTNVSACSSIGPYFMLYTSPKVRGLRTIKKEILKLVETFVEKALYNPRDAEVLKAMTVIITRLQGLMEDQVPAIMENVFCTLMIEYPEHRVEF--FNLLRAINLYCFPALLSKHDNRDVETAGLNMCLAVCNFNFIRILQDVFFVLTDTDHKA-GFK--TQ--SM--L------LMRLFYFVHPADGSAP-KI---------QGPIYQPDGNREFLCFELNTYFRVVLEREARAADLERRSKVGGLLK---------PSELE- | |||||||||||||
4 | 6rutB1 | 0.07 | 0.04 | 0.62 | 0.67 | DEthreader | ------------------------------TLTPWT-SSL----------GLVRSQND-NLNISSV-----------------------------DNLKYLNAVEKYLDGQQNFAAVPVEVLLVALYHE-PLLTTDQIAREK------GMGATVVS-----VDHIDPKKMVENY----EWF--------PIALPFEAYFANIG-NMV-AIG--------IFGGNGHATKMFTTNPL----S--IGVFRTGWPYAVLFG-GLINPQTNGLKDL--PL-GTNRWFEYV-PRMAGTLTMGDTATVPRLQGQGLLREDLQIFT--YA-LFKLSLFAFTTGPNFLFLPWFSLLGTIPVLIESTLVG---NWTSQDVGQPWTSFKGLWDPTLKSLNTLSFQLYKLTTKIKKGTA--N--GVSQTINTI------------------------GIGDSTFTKMD----------------G----K---L---T--GV-VSTPL------------ | |||||||||||||
5 | 4fgvA | 0.07 | 0.07 | 1.00 | 0.67 | CEthreader | PEEVLIVENDEGEIVREFVKDTDSVQLYKTIRECLVYLTHLDVVDMEQIMTEKLARQVDGSEWSWHNCNVLCWAIGSISMAMNEETEKRFLVTVIKDLLGLTEMKRGKDNKAVVASNIMYIVGQYPRFLKANKLFEFMHESHEGVQDMACDTFIKIAKQCRRHFVALQPSENEPFIEEIIRNIGKITCDLTPQQVHTFYEACGYMVSAQGNRNQQERLLAELMAIPNAAWDEIIKAATMNPGILHEPDTIKIIGNIMKTNVSACSSIGPYFFPQIGRLYNDMLQMYAATSQLISEAVARDGEIATKMPKVRGLRTIKKEILKLVETFKAEDLQAVRSQMIPGLLDSVLVDYNRNVPGARDAEVLKAMTVIITRLQGLMEDIMENVFECTLDMINKDFAEYPEHRVEFFNLLRAINLYCFPALLKLDVETAGLNMCLELINNIAEKTDVQTCNAFFNQFFIRILQDVFFVLTDTDHKAGFKTQSMLLMRLFYFVHPADGSAPKIQGPIYQ | |||||||||||||
6 | 5ifeC | 0.05 | 0.05 | 0.90 | 0.80 | EigenThreader | NLAKAATMISTMRPDIDYVRNTTARAFAVVASALGLKAVCKSKKSWQARHTGIKI--------VQQIAILMLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGPLWKGIRQHRGKGLAAFLKAIGYLIPLMDLIREFQSPDEEMKKIVLKVVKQCCGTDGVEANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLG---AADIDHKLEEQLIDGILYAFQEAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEY---------PEVLGSILGALKAIVNVIGMHKMPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVS--------AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLQN---------------RVCTTVAIAIVAETCSPFTVYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVF----------ETSPHVIQAVMG | |||||||||||||
7 | 2pffB | 0.13 | 0.10 | 0.79 | 0.57 | HHpred | -------------PTTPAELVG-------KFLGYVSSLVEPSKVGQFDQVLNLCLTEF-----ENCYLENDIHALAAKLLQENDTTL-VKTKELIKNYIARIMAKRPFDKKSNS-----ALFRAGNAQLVAIFELRDLYQTYHVLGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP---S---NTPDKDYLLSIPISCP--------LIGVIQLA----HYVVTAKLLFTPGELRSYHSQGLVTAVAIA--ET-----DSWESFFVSVRKAITVLFFIGVRCYEAYLPPSILEDSLENNEGVPSPMLSIQEQVQDYVNKTNSHLPAQVEISL------VNGA--------KNVSGPPQSLYGLNLT-------LRKAKAPSGLDSRIPFSERKLKFS------NRFLPVASPFHSHL----L--VPASDLINKDLVKNNVSFN-AKD----IQIPVYDTFDGSDLRVLSISERIVDCIIRLPVKWETT-------------- | |||||||||||||
8 | 1jkyA | 0.10 | 0.08 | 0.77 | 0.52 | MRFsearch | --VKKEAAEKLLE--KVPSDVLEMYKAIGGKIYIVDKKKIKDIY-GKDALLHEHYVYAKPVLVIQSSYVENTEKALNVYYEIG------------------------------------------------KILSRDILSKINQPYQKFLDVLNTIKNASDTDFSVEFLEQ---------------------NSNEVQEVFAKAFAYYIE----PQHRDVLQLYAPEAFNYMDKFNEQLSLEELKDQRMLSRYEKELLKRIQIDSSDFLLQIDIRDSLSEEEKELLNRIQVDNPLSEKEKEFLKKLK--------QPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGKINRGIFNEFKKNFKYMIVDIGKLILQRNIGLEIKDVQIRIDAKVV---------------PKSKIDTKIQEAQLNINQEWNKALGLP--------KYTKLITFNVHNR-------YASNIVESAYLILNEWKNNIQSDLIKKVTNYLV | |||||||||||||
9 | 6tgbB | 0.08 | 0.07 | 0.89 | 0.98 | FFAS-3D | KKPLSAIIKEVCDGWSLANHEYFALQHADSSNFYITEKNRNEIKNGTILRLTTSPAQNAQQLHIQSSSMDAKLEALKDLASLSDVTFAQEFNLDGISLLTQMVESGTELDMLSFTLTAFVELMDHGIVSWDTFSVAFIKKNKSAIDISILQRSLAILESMVNSHDLYQKVAQEITIGQLIPHLQG-------SDQEIQTYTIAVINALFLKAPDERRQEMANILAQLRSIILTHVIRAQR----AINNEMAHQLYVL----------QVLTFNLLEDRMMAQRDIIFELRRIAFDRDYKKLGFINHVNPAMDFTQTPMLALDNMLY------------FAKHHQDAYIRIVLENSSREDKHEGRSSIELTKMLCEILKVGELPSETCNDFH-----PMFFTHDRSFEEFFCICIQ---------LLNKTWKEMRANKVMQVVKELTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQSRPILELKEK-------IQPEILELI- | |||||||||||||
10 | 6tc0C | 0.09 | 0.08 | 0.88 | 0.72 | SPARKS-K | PGLAVSVLKAIFQEVHDRHTVFSIITNFMRSREEELKLGADMDGEK---------------------DPRNLLLAFRIVHDLISKDY-SLGPFELFEVTSCYFPIDFTPPPNDPYGIQREDLILSLRAVLASTPLPLLIEKVDSEILSAKLDSLQTLNACCAVYGQKELKDFSIRREVFQTASERLRADAEDLLGSFLSNILQDCRHHLCEPDMKLVWPSAKLLQAAAARACEHLTSNHKHSQSNQRRTILEMILGFLKLQWSYEDRDE---RPLSSFKDQLCSLVFMALTDPSTIRLTVLGAQPGLLSAEDLELAVGHLYRLTFLEED----------SQSCRVAALEASGTLATLYPGAFSRHLHFRCLQALSAVSTHP----------------------SIVKETLPLLLQHLCQNKGNMVTESSEVVAVCQSLQQVAEKCQQDPESYWYFHKTAVPCLFALAVQASMPLLEDEVLAALASVIGTATTHL-----SPELAAQSVT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |