>PF03186 (285 residues) ALALMLDFWLGDPRWLPHPVRGMGALIAFFDRRLNKGAYRRVKGMVTVTAVTGTVYIISL LAVKISYSLSWLFGVVVEAILIFTTIATKSLQEAAWNVLLPLERGDMEQARRELSMIVGR DTENLDEPEIVRACVETVAENTSDGITAPLFYAWIGGAPLALFYRAVNTCDSMLGYKNDT YRAFGWASARLDDVMNYIPARLTAAVMVFAHSGKRFRYCWRVLLRDARKHPSPNSGWPEA AMAALLGVRLGGTNTYHGVVSRRPTIGDPLVPLQTNHIRRALRIM |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | ALALMLDFWLGDPRWLPHPVRGMGALIAFFDRRLNKGAYRRVKGMVTVTAVTGTVYIISLLAVKISYSLSWLFGVVVEAILIFTTIATKSLQEAAWNVLLPLERGDMEQARRELSMIVGRDTENLDEPEIVRACVETVAENTSDGITAPLFYAWIGGAPLALFYRAVNTCDSMLGYKNDTYRAFGWASARLDDVMNYIPARLTAAVMVFAHSGKRFRYCWRVLLRDARKHPSPNSGWPEAAMAALLGVRLGGTNTYHGVVSRRPTIGDPLVPLQTNHIRRALRIM | |||||||||||||||||||
1 | 3g61A1 | 0.09 | 0.06 | 0.69 | 0.87 | DisCoVER | RYAGWLDRLYMGT---A-AIIHGVALP--LM--------MLIFGDMTDYYYTGIGAGVL-------------------IVAYIQVSFWLAAGRQIHKI---RQ---------KFFHAIMNEIGWFHDVGELNRLTDVSKINEG-IGDKIGMF---------FQAMATFFGGFIIGRI--GQVLTVFFSVLIGAFSVGQASPNIE-AF--------------------------AN--ARGAAKKELSGIATAIEFTVVSLTREQKFETMYAQSLQIPYRNAMKK- | |||||||||||||
2 | 3owaA | 0.05 | 0.04 | 0.68 | 0.83 | DEthreader | VSSALIAEKFSRAGGFAIT-GA------------------------------------GIGSLPIVLGKKLPLA--INIGRYKLGVGVGSAKRAVEISAQYANQRQQ----------------FPLIQEKLAN-AAKTYAAESS-VYRTVGLFESRSIAEYAIECSLNKVFERNE----EQEILVNIADIVSNLYAE-SAVLRTEKAIKT-TGLEKNKQKVLYT-EVFCQEAFNEI--------------------------PLNVIPKKREIAAKILEDERYTV | |||||||||||||
3 | 5l22B1 | 0.08 | 0.07 | 0.98 | 0.52 | CEthreader | LPSIYMLAVYDIVVPSTSVPTLLVITALAVVLYFALGLLQSVRAKVMQIISLKLDSELNKEVFTSSFEYAIRNPSKASAQPINDLYQLKQFLTS-PVLFAIFDLPWVPIYFGVLFVFHVYYGVMAILSMAVIVALAILNEYIT--KKKLKESNELLVRSTNFLNRALLNAEVVEALGMRNNLYKKWMNFYSKHLSAFEEATDRNNFLSNLTRIFRIMAQSLMLGLGGYLAIKHEITTGMIVAGSILLGRILGPIDTIVNGWR----QIGNTKVAYTRLNEFLKFL | |||||||||||||
4 | 5xd6A | 0.10 | 0.06 | 0.56 | 0.60 | EigenThreader | ADELRDITDNYGSKQPDQEFLAQVSMVSRHDILHGRAQPG----------------------------PVLS-----------WHQRVKIAVGAARGLEYLHEKANPHVIHRDID----LSNQGYSTKSDVYSFGVVLLELLTG---------------------------------------------------------------RKPVDHGQQSVVTWATPKLSEDKVKQCVVAKLAAVAA---LCV---------------QYEADFRPNMSIVVKALQPL | |||||||||||||
5 | 5tj5A | 0.12 | 0.07 | 0.61 | 0.30 | HHpred | SVCIVYKWAVDWVKDGKPAPGLLNMLINMFLSPGTDEHQAKVQVFLLLMALVCIPWLLLV---KPLHKFDIMIHQVIHT--IEFCLNCVS---HTASYLRLWA---LSLAHAQLSSVL----------------WTMTIQIAFRGFVGVFMTVALFAMWFALTCAVLVLMEGTS--------AMLH-SLRLH-WVESMSKPYEPFAFEYK--------------------------------------------------------------------------- | |||||||||||||
6 | 4ry2A1 | 0.09 | 0.07 | 0.85 | 0.52 | MRFsearch | ------------------TQNMMVKFAGFLKPLKKTVLCIFLASLLYTALGIAGSFYIKFLFDDLIKDLHIISAGFAVIFLLQIFLNYYRDKSIMMEYYSHVLKLPMNFFNRKVGEIISRFMDASKIRQAISGATLTIMIDTIMAVIGGILLYIQNSSLFFISFIIILLYGIIVTVFNQIMEDNAKLTSALVESVKGKEGMLYINLSSLTGIVAGLGGIVILWAGAYNVIKGNMSGGQLLAFNALLAYF-------------------------LTPVKNLIDLQ | |||||||||||||
7 | 5u1sA2 | 0.11 | 0.11 | 0.96 | 0.76 | FFAS-3D | ---LNLDMSKHLTTNLSKITLYINKWLQKSDEK-AERISSFEMDFVKMLLCYLNFKLSIELSLCIKSKEKYYIVPYADNYLLEAYLSLYMIDDALMMKNQLQKDSDLTAFQIYFGKTLINNDHNLPM----SLYIKVILLNIKIFNESAKLNIKAGNVISAVCRKAQNLALSLLKKKNKLSQGSRL---ALLKSLSFSFFQLIKI-HIRIGSARDCEFYSKELSRIISDLEEPIIVYRCLHFLHRYYMITEQTCLQNITLGKANKAFDAEADIEFVKLEQSLVLY | |||||||||||||
8 | 5k7vA | 0.12 | 0.10 | 0.84 | 0.77 | SPARKS-K | ---------------------IEEVVAEMIDILAESKSIEELARAAAIEEIARLATAAIQLIEALAKNLAS-EEFMARAISAIAELAIEAIYRLATFMARAIAAIAAVTAILAIAALAS-NHTTEEFMARAISAIAELAKKAIEAIYRLAFMAAAIEAIALLATLAILAIALLANHTTEFMAKAISAIAELAKKAIEAIYRLAYIEKAIEAIEKIARKAIKAIEMLAKNITT--EEYKEKAKSAIDEIREKAKEAIKRLEDNRT--------------------- | |||||||||||||
9 | 3rkoB | 0.09 | 0.08 | 0.90 | 1.00 | CNFpred | GLSLTMLSVV-----TGVGFLIHMYASWYMRGE-------EGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYDPKNGAAAMKAFVVTRVGDLAFALFILYNELGTDGNNMLMWATLMLLGGAVGKSAQ-TPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALAYSTMSQIGYMFLALGVAWDAAIFHLMTHAF------FKALLFLASGSVILACHHEQNI-------FKMGGLRK--SIPLVYLCFLVG | |||||||||||||
10 | 5k3jA | 0.04 | 0.02 | 0.68 | 0.83 | DEthreader | FNEEESLHLHRIGYEGH----------------------------------------FIPTLQSQASDQQEWLE-RSGVKISQMAMEGLFLAHALTIAARYSAVRRQG----------------LDYQTQQHRLFPSLARAYAF-IFTGFETIHLYSLLHLTSGLKSVVAHECNM-------SAVELTRASRLHTRLFIIEAFMRRVSRIEDIPVKEVLTDLLHLHVNELLDVA------------------L-------DYVRDQLYLYLEKIRPNAVSLVDSF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |