>PF03140 (385 residues) IYRVPHNIRKFNKDAYTPEVVSIGPFHHGNEKLLKMEYHKRLYCRQFIERSETKNLESFV SCVQEVEAEVRGCYSDDIKLSKEKHVMVILVDCCFILEFLLRIHFMQLQDIIFLSPRLWN FLKIDLLLIENQVPFFVLDKLYNLAFPSTLNSNHPSLLGLTLLVVPNDTIPPAYKKELTL SSVGRIAHFTDLIRKLLLRSSQFFQPSASGSARGKKITQIYSATKLNEAGVKFEVNKNDK CLLDLEISGCTLRIPFISVDDWTEVILRNLLAFEQCHCIYESYLTDYIIFFDFLINADKD VDFLIKKKIIVNWLGDSNAVAKMFNGLGVNLLYPDFNVQYSHIFDELNAFCARPWNKNVA TLRRDYCNTPWKTVASIAGIFLLIL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | IYRVPHNIRKFNKDAYTPEVVSIGPFHHGNEKLLKMEYHKRLYCRQFIERSETKNLESFVSCVQEVEAEVRGCYSDDIKLSKEKHVMVILVDCCFILEFLLRIHFMQLQDIIFLSPRLWNFLKIDLLLIENQVPFFVLDKLYNLAFPSTLNSNHPSLLGLTLLVVPNDTIPPAYKKELTLSSVGRIAHFTDLIRKLLLRSSQFFQPSASGSARGKKITQIYSATKLNEAGVKFEVNKNDKCLLDLEISGCTLRIPFISVDDWTEVILRNLLAFEQCHCIYESYLTDYIIFFDFLINADKDVDFLIKKKIIVNWLGDSNAVAKMFNGLGVNLLYPDFNVQYSHIFDELNAFCARPWNKNVATLRRDYCNTPWKTVASIAGIFLLIL | |||||||||||||||||||
1 | 6ek7A1 | 0.08 | 0.04 | 0.48 | 0.81 | DisCoVER | IFTKE-DLI-----NLKLYVRKGLS--------------L--PT--------------RQDEVEAYLGYKK------IDVAGL-EPKDIKLL-FDE------------------------IHNHALNW-------------------------------------------------------------------------VEQAVLQQSLDLDIAAKIIGLLGDITKVSDYRITLT-----GGELSSGDKVNGLEPQV-IGIRMV-DAESALNHLDFMWLVLNQITESQQFAMINN-AL--RL--------------TSFVNKFQQVITPWSVGDSARQLV----------------------------------DIFDEAI-- | |||||||||||||
2 | 5bv9A | 0.04 | 0.03 | 0.69 | 0.67 | DEthreader | -----FL-LY-QIY-HSTTSEYSLLEAWDN-MEKYIIPVNNDEQPHMSAYNPSS--DGELKSTYG--------------------TNE-TYLMHW---N--QRG--EAIHPSQF----YTNATDADARAIQYKMGDFLRYGMY--YFQTPGNGKGACHYLMASHCHQGY-------------ASDWEKTLKRQLEFYVW-----------------------------------------LQSK---------EGAIAGNNWFGMQAWPMERVAELIFVVQAKCITKWVNYALDIFRPVSYFLDRRILGGIAWAVTKDPTQDGVLGSLVKATFAATLETNYTALGVRAK-DA----AA-QLLEVAWNYN-GGI-FWSQVDMAT-- | |||||||||||||
3 | 4k6jA | 0.06 | 0.06 | 0.97 | 0.54 | CEthreader | ILSRDRLNMDLDRASLDLMIRLLELEQLNEKDMNKIKEKIRRLCETVHNKHLDLENITTGHLAMETLLSLTSKRAGDWFKEELRLLGGLDHIVDKVKECVDHLSRDEDEEKLVA---SLWGAERCLRVLESVTVHNPENQSYLIAYKDSQLIVSSKALQHCEELIQQYNRAEDSICLADSKPLPHQNVTNHVGKAVEDMRAIIGVLLNLTNDNEWGSTKTGEQDGLIGTALNCVLQVPKYLPQEQRFDIRVLGL-GLLINLVEYSARNRHCLVNMETSCQVHAVQALVQLFLERERAAQLAESKTDELIKDNKALQHAGKHMEDCIVAS---------YTALLLGCLCQESPINVTTVREYLPEGDFSIMTEMLKKFLSFMNLTC | |||||||||||||
4 | 4k6jA | 0.07 | 0.07 | 0.93 | 0.60 | EigenThreader | GPLGSGYTVVQHVKHFNDVV-----EFGENQEFTDDIEYLLSGLKS------TQPLNTRCLSVISLATKCSFRMHLRAHGMVAMVFKTLNLSLCTAALMYILSRD--RLNMDLD--RASLDLMIRLLELMNKIKEKIRRLCETVHNKHLDLENITLAMETLLSLTSKRAGDWFKEELRLLGWGAERCLRVLESVTVH-NAEDSICLADSKPLPHQNVTNHVGKAVEDCMRAIIGVLLNLTNDNTGE-------QDGDIRVLGLGLLINLVERNRHCLVNMCQVAVQALVQLFLERERAAQLAESKTDELIK---DNHMEDCIVASYTALLLGCLCQESPINVTTVREYLIMTEMLKKFLSFMNLTCAVGTTGQKSISRVIEYLEH | |||||||||||||
5 | 3f2bA | 0.12 | 0.07 | 0.60 | 0.37 | HHpred | ----------------------------------------TRFVRQMLEETRPKTFSELVQIS--------GLSHGTDWLCRDDIMVYLIYLAFKIMESVRKGKGL--------T---PEFEA---EMRKHDVPEWYIDSCKKIKYMFPK-AHAAALMAVRIAYFKVHHP-------------------LLYYASYFTVRAEDFDLAKGIQATASLLTVLEVALEMCERGFSFKNIDLYRSQAEFVIDGNSLIPPFNAIPGLGTNVAQAIVRARE-----EGEFLSKEDLQQRGKLSKTLLEYLESRGCLDSLPDHN-QL----------------------------------------------------------------- | |||||||||||||
6 | 3o2qA | 0.15 | 0.10 | 0.69 | 0.38 | MRFsearch | ----------------------------------------SERVVDLLNQAALITNDSKITVLKQVQELIINK---DPTLLDNFLDEIIAFQRKFVIGFIEEACKR--------DIELLLKLIANLNMLLVKKAILTMTQLYKVALQWMVWDMVSAMAGDIILLLDSD-------------NDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDDHPYIQYNVLWEE---------------------------------GKAALEQLLKFMVHPAISSINLTTALGSLANIARQR---------------PMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLSLEFQAQITTLLVDLGTPQAEIARNM-------- | |||||||||||||
7 | 1yvpB | 0.09 | 0.07 | 0.77 | 0.67 | FFAS-3D | -WQVSNRLR---------RFLCFGSYYIEEKKL---GQENAEALLRLIE---DGKGCEVVQEIKTFSQ-------EGRAAKQEPTLFALAVHLFTFIQFKKDLKEGMKCGMW--GRALRKAVSDWYNTKALNLAMAVTKDLLRLSHIKPAN-----EGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELE--------------IIHLIDEYRLVR--------------------------EHLLTIHLKSKEIWKSLLQDMP---------LTALL---RNLGKMTADSVLA---PASSEVSSVCERLTNEKLLKKARIHPFHILVALETYKKGHIVEALDNAFYKSFKLNASVVAAAMCMLV--- | |||||||||||||
8 | 5mz61 | 0.08 | 0.07 | 0.90 | 0.73 | SPARKS-K | QQEISELFIAEGVN-------------GPID--MNSLSKLARITSYYASSEYFQGLAKYQRTACKMFITWQTLRKEAMECRSAKLCFFYFYRAVVCLLDYIDLSD---------DTLAKEAALRWLMFLGE---TELIEKKLKTW---KMDKSSKDMFSATEFAMNYLKKSEYRVDKVKSDPTRSFSRYELASYVSWLCSTLSNVPVGSALRECEFPDRVSHSDSLVRNRIPGLASSQFDNSVNASIWPFYVHIVNVTTAQTSAMILNLRVALKSASFFRVLQTTNTLAYYSSIIEEEKNAKLMRVSCTIY-PLHSSFAAEYMMSYAIHDFS--------QLSIKHFNDEFARIRERGMSSQVLMHPRPNIIQNEIFGMCVIRWL | |||||||||||||
9 | 3gjxA | 0.06 | 0.05 | 0.78 | 1.00 | CNFpred | ----------------------------------QQVHTFYEAVGYMIGAQTQTVQEHLIEKYMLPNQVWDSIIQQVDILKDPETVKQLGSILKTNVRACKAVGHP--------FVIQLGRIYLDMLNVYKCLSENISAAIQANG-KQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN----VPPLLDAVLIDYQRNVPAAREPE----------VLSTMAIIVNK---LGGH------------------ITAEIPQIFDAVFECTLNMINKDFEEPEHRTNFFLLLQAVNSH-AQFKLVLDSIIWAFKHTVADTGLQILFTLLQNVA------EEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV | |||||||||||||
10 | 1hn0A | 0.06 | 0.04 | 0.71 | 0.67 | DEthreader | LINEFV-GG-EK-ETNLALE-E----N-ISKLKSDFDALNIH-TLANGGT-------------------SR-YVLEKDPTQKAQLKQMYLLMTKHLLQGFVKGSALVT----T--H-WGY-SSRWWYISTLLMSDALKANLQTQV----Y----DSLLWYSREFKSS--MSADSSDYL----LALLLLE-LV-TFS-YITGALTQ----------------------------VPPGGKD---GLRP---DGTAWRYPGY--FP-AFKNASQLIYLLRDSVGGWLKKAMVSAWIYSNPEVGLPLA--G--RH--PFNS-PSLKSVAQGYYWLAMSAKS--D--L---QGFYA--SSLEGQYGMMAFKKSVFIGSNINSSPKDA-- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |