>PF03044 (320 residues) RNKLRNFLNNECLWVKNVACTSFTKVYCATTAVSPFFKPISPQGVPDKHYINVTLIILKP KKSHPYITVYINDLAVDCCSTEILQVKPVPCSHFSLIYFGPLIAPPHNVQIPANLSIKAS KKSHLTKNQVIFTSKVIHPERLPDGYKSASLIGACAWYSEGAIFQHFLSTDYMSLCPAFK EFPSLSRILSLLTRCDDLSCVPCYGEKIHVNCQSGYTDSDCDGKSNSCPCITSCTALKKD IVPITGHRNLLSLLFDATIQHNITSIKFFSPQTPTTVNNVFCGVLDTGETVECTCEAWNL LMFSDFISRQMIYNCQIMKR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RNKLRNFLNNECLWVKNVACTSFTKVYCATTAVSPFFKPISPQGVPDKHYINVTLIILKPKKSHPYITVYINDLAVDCCSTEILQVKPVPCSHFSLIYFGPLIAPPHNVQIPANLSIKASKKSHLTKNQVIFTSKVIHPERLPDGYKSASLIGACAWYSEGAIFQHFLSTDYMSLCPAFKEFPSLSRILSLLTRCDDLSCVPCYGEKIHVNCQSGYTDSDCDGKSNSCPCITSCTALKKDIVPITGHRNLLSLLFDATIQHNITSIKFFSPQTPTTVNNVFCGVLDTGETVECTCEAWNLLMFSDFISRQMIYNCQIMKR | |||||||||||||||||||
1 | 6nb3A1 | 0.05 | 0.03 | 0.75 | 0.86 | DisCoVER | KSAC--IE--VDIQQTFFDKTWPRPIDVSKADGII-YTYSNITITYQGLFP-YQGDHGDM------------------------YV-------YSAGHATGTTP------------------QKLFVANYSQDVKQFAN--GF-VVRIGAAANTIRKIYPAFMLGSSNHTLVLLPDGCGTLLRAFYCILEPRSGNH---CPAGNSYTSFATYHTPADC-SDGNYNRNASLSFKEYFNLRNCTFMYTY-----------N--ITEDE--ILEWFGITQGVHLFSRYYGGNMFQLPVYDTIKYYSIIPH-SIRSIQYIRRA- | |||||||||||||
2 | 4kxfK | 0.08 | 0.05 | 0.67 | 0.67 | DEthreader | -----AF-NFYPLFEPIMWKKHRVQLTLLLQAFIHLRSARGGLFETLYDQL-------------------EVLFLLDGYN---------------------EFHPCEALNNMVIVALTAEVGDMTSKDLAVL------RL--QIQESRLRNLKTPLFVTCIQFQAHTQ---TMLFQTFYDLL----G-LALVFDFEPSSMNEVLVTIGLL----CKYTAQR--TYKFFFQYTAGRRLSSLLGLMISDITSLYGNL-L---YTCG------------SSTEATAVHLMVY-LFESMSK-D--------------------- | |||||||||||||
3 | 3ol2B | 0.07 | 0.07 | 0.97 | 0.62 | CEthreader | TSGTLYLGATNFLFQLSPGLQLEATVSTGPVLDSRDCLPPVMPDEPQAQPTNNPNQLLLVSPGALVVCGSVHQGVCEQRRLGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQGLAGEPLLFVGRGYTSGGGIPPITTRALWPPDPQAAFSYEETAKLAVGRLSEYSHHFVSAFARGASAYFLFLRRDL----------QAQSRAFRAYVSRVCLRDQHYYSYVELPLACEGGRYGLIQAAAVATSAHGEVLFAAFSSAAPPPSAAAGASGADEVDRLANRTRDACYTREGRAEDGTEVAYIEYDVNSDCAQLPVDTL | |||||||||||||
4 | 2iirA | 0.08 | 0.07 | 0.89 | 0.62 | EigenThreader | ----------MRVLVINSS----SIKYQLIEM--------------EGEKVLCKGIAERIGIEGSRLVHRVGDEKHVIEREGHRVVMKLLPGVPNVAVFDTAFHQTIPQKAYLYAIPYEYYEKYKIR--RYGFHGTSHRYVSLEELKIITCHIGVAAVKYG-KCVDTSMGF---TPLEGLVMGTRSGFIMEKEGISPQEMYDILNKKSGVYGLSKGFSSDMRDIEEAALKGDEWCKLVLEIYDYRIAKYIGAYAAAMNGVDAIVFTALEFLGVKLDKQKNEET--IRGKEGIISSRVKVLVVPTNEELMIARDTKEIVEK | |||||||||||||
5 | 4rkmA1 | 0.18 | 0.11 | 0.63 | 0.38 | HHpred | -------------------RSRHATTIRFPGEH-PENNKLNDPVDKDTAS------IL-PQGDVVYCTV---GHIRTKF---GFFDAWL---LRGTYHVELLKNGTG--QIVAGGNQWQRTWLNLSPEVA-KKIKKWVPDFPVTEYGDRGLASYAAKYKKSM--SFQASTSYCEVCPWKFDFKNESEFYAATIS-KGVSCEECHGAGGHLEGGSGLLDPHD---VTGNV---TGEKGIK---GVS-YNSEQGYL------------------------------------------------------------------ | |||||||||||||
6 | 4a0xA | 0.08 | 0.02 | 0.23 | 0.60 | MRFsearch | --VLFAQANSLCVALIK--QPTVLTHESSIQFIEKV---------KLNDTVRAEARVVNQTHYYVEVKSYVKHTLVFKGNFKMFYDKR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2nn6C | 0.12 | 0.09 | 0.77 | 0.36 | FFAS-3D | LEYYRRFLKEN------CRPDGREGEFRTTTVNIGSI-----------------------STADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGK---------------LVWVLYCDLICLDYDGNILDCTFALLAALKNVQ--------------LPEVTINEETALAEVNL---------KKKSYLNIRTHPVATSFAVFDD-TLLIVDPTGEEEHLAT--GTLTIVMDEEGKLCCLHKPGGDCMSRAVTRHKEVK---KLMDE | |||||||||||||
8 | 1w8nA1 | 0.05 | 0.04 | 0.91 | 0.71 | SPARKS-K | ALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDWGEQAGQTTAPIKGFSDPSYLVDRETGTIFNFHVYSQRQGF---AGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHA-----GRLIQQYTIINAAQAVSVYSDDHAGEAVGVGMDENKTVELVLLNSRDSARSGHSYGPVTINASIIRAFPDAPAGSARAKVLLFSNAASQTSRS-------QGTIRMSCDDGQT----WPVSKVFQPGSMSYSTLTALPDGTYGLLPGTGIRYANFNLAWLG----------- | |||||||||||||
9 | 6eojA | 0.07 | 0.05 | 0.77 | 0.91 | CNFpred | -----------YILVTVS--RGDIKIFELEEKNKRKLLKVDLEILNEMVITSGLILKSNM-QEEQLLFTFVT------ADNQIIFFTKDHNDRIFQLNGVDQL------------------------NESLYISTYQLGDEIVP-DPSIKQVMINKLGHNKEEYLTILTFEIYQYRKLSRFYRNVTRNDLAITGAPDNAYAKGVSSERIMHYFPDY---------NGYSVIFVTG------------SVPYILIKEDDSTPKIFKFGN--------IPLVSVTPWSERSVMCVDDKNARVYTLTTNMYYGNKLPLKQIKI | |||||||||||||
10 | 6rc9A1 | 0.07 | 0.05 | 0.68 | 0.67 | DEthreader | NA--INPRLTPWTFSSLP-LTGENPGAWALVRDNSAKGITPTRTEALSTFVPVEVAQDPSN--PYRFAVLLVSASILILYDAPY-------------ARNRTAID---RVDHL--KAMTEWFDGGQTVADNE-TRLLYDELE------SNLNLVAQG------QGLLRE--DL---------------Y--SNKL---TDQPLS---ADFVNE----RFNQKLTV-------SPTLSRFSTGFVGSKNNAQRAQLFLGLIVNGLLNPFKIPDSKATLIT--------------HPNALAFQVVTQ--------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |