>PF02990 (539 residues) PYSYYSLPFCKPDTIVDSAENLGEVLRGDRIENSPYVFEMREPKMCQIVCKATISDKQAK ELKEKIEDEYRVNMILDNLPLVVPIARPDRDDVVFQGGYHVGVKGQYAGSKDEKYFIHNH LIFLVKYHKDENSDLSRIVGFEVKPFSVKHQFEEKWNDANTRLSTCHPHANKIVINSYTP QEVEAGKDIIFTYDVGFEESDIKWASRWDTYLLMTDDQIHWFSIVNSLMIVLFLSGMVAM IMLRTLYRDISRYNQLETEEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMLL VTMMFAVLGFLSPSNRGGLMTAMLLIWVLMGLFAGYASSRLYKMFKGSEWKSITLKTAFL FPGIAFGIFFVLNALIWGEKSSGAVPFSTMFALVLLWFGISVPLVFVGSYLGFKKPAIEA PVKTNKIPRQVPEQAWYMNPAFTILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFL VFIILIITCAEIAIVLCYFQLCSEDYMWWWRSYLTSGSSAIYLFLYAGFYFFTKLQITK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | PYSYYSLPFCKPDTIVDSAENLGEVLRGDRIENSPYVFEMREPKMCQIVCKATISDKQAKELKEKIEDEYRVNMILDNLPLVVPIARPDRDDVVFQGGYHVGVKGQYAGSKDEKYFIHNHLIFLVKYHKDENSDLSRIVGFEVKPFSVKHQFEEKWNDANTRLSTCHPHANKIVINSYTPQEVEAGKDIIFTYDVGFEESDIKWASRWDTYLLMTDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETEEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMLLVTMMFAVLGFLSPSNRGGLMTAMLLIWVLMGLFAGYASSRLYKMFKGSEWKSITLKTAFLFPGIAFGIFFVLNALIWGEKSSGAVPFSTMFALVLLWFGISVPLVFVGSYLGFKKPAIEAPVKTNKIPRQVPEQAWYMNPAFTILIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFLVFIILIITCAEIAIVLCYFQLCSEDYMWWWRSYLTSGSSAIYLFLYAGFYFFTKLQITK | |||||||||||||||||||
1 | 3vvnA | 0.07 | 0.05 | 0.67 | 0.59 | DisCoVER | TTKGVQ------------LLRDPKKAIVRLS------------IPMIGMVQTGIWVSGLGPESLAAVGLFALAAGLGVGTSSAIARRIGARDNVAVHSSGLAIEYARVLL--AGAFIIVFNNVGN------------GILRGEGDANRAMLAMVLGSGLNILDPFILGFGVVGAAYATLLSMV-----VTSLFIAYWLFVKRDTY--VDITLDFSPILDILRVG-LPSSLSQLSMSIAMFFL--------------------------NSVAITAGGENGVAVFTSAWRITMLGIVPILGM------AAATTSVTGAAYTAYLYAIAFMIELVVMLFAPQVAYLFAQVIKGDLISALRTLP---------------------------------------V--FL--V--------------------------------------LTPFGMMTS--AMFQ----------G---IGE-GEKSLLTIFRTLMQVGFAYIFVL-GLRGVWIGIVIGNMVAAIVGFLWGRMRISALKK--- | |||||||||||||
2 | 2j8sA | 0.06 | 0.04 | 0.63 | 0.67 | DEthreader | -----PAVTISATVTQIE--------LMYMSSNSDTGTV--------DAQVQNLQ-MP--EVQQQG-----EKSSSS-FLMVVGVINT--TM--------VAANMKD------AISRTSGVGDVQLFG----NYDIIAEGLGIKLATGAN-----------AIRAELAKMEPF------------------------------------IVYPY-DTTPFVKISIHVINTLTMFGMVLAIGLLVDDAIVVVNSMGQIQGALVGIAMVLSA--TV--YLYLIIVVGMAYLFVR-LPSSFLPDEDKVEAITMTMVFAFNLPAIVELGTAT-----------------------------------------HPDM-LTSVRPNGLEILGQATMGMSYQERLSGNQAPSLYAISLIVVFLPFSVVATDAVRMRLRPILMTSL--AFILGVMPLVIS-TGAG----------------------SGAQNAVGTGVMGGMVTATVLA-IFFVPV------------------------------ | |||||||||||||
3 | 5xjjA | 0.07 | 0.06 | 0.79 | 0.62 | CEthreader | ------------------------------------------------SGQLTAELKRVTRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVTGFSIMYGLVGALETLCGQAYGAKQYEKIGTYTYSAIASNIWFYIENILISLGQDPDISRIAGSYAFWLIPVLFAQAIVIPLTRFLLTQGLVLPLLYTAVTTLLFHVFVCWVFVLVFVLGSNGPAMATSVSFWFYAVILSCYVRFSSSCEK------------TRGFVSEDFVSCVKQFFQYGVPSAAMICLEWWLFELLILCSGLLSNPKLETSVLSICLTTETLHYVISSGVAAAVSTRVSNVSVLAGLCLWLVESAFFSILLFTFRNIIGYAFSNSKEVVDYVADLSPLLCLSFILDGFTAVLNGVARG---------------------SGWQHIGAWNNIFSYYLVGAPVGVYLAFRHDLNGKGLWCGVVIGSTVQATVLAIVTASMNWKEQAEKARKRI------------------------------ | |||||||||||||
4 | 5oybA | 0.08 | 0.06 | 0.80 | 0.73 | EigenThreader | ----------------------------------MDY---HEDDKRFRR---EELCREAEFLKLTKKVYHISETRGLINSVLQKITEHRPQT---------TKRLSYPFSREKQHL-------------FDLTDRD-----------SFFDSKTRSTIVYEILKRTTCGITSLLANGV------------YSAAYPLHDGDYNDRKLLYEEWASYGVQPIDLVRKYFGEKVGLYFAWLGAYTQMLIPASIVGVIVFLYGCATEMCDQRYNITMCPLCDKTCSYWKTARASHLFDKQMRLNYRWYEARVLEKSPAYFTNLVSIIFMIAVTFAIVLGVIIYRISTAAALAMNLVVIILLDEVYGCIARWLTKIEV---------PKTEKSFEERLTFKAFLLKFVNSYTPIFYVAFFKGRFVGRPGDYVEECAPGGCLMELCIQLSIIMLGKNLFEIGIPKMKKFIRYLKRKQRYEVDFN---------LPEYMEMIIQFGFVTLFVASFPLA----PLFALLNNIIEIRLDAKKFVTELR | |||||||||||||
5 | 6y5rA | 0.14 | 0.05 | 0.37 | 0.35 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SVTGIMARSGD-LKDAQKSIPIGTILAILTTSFVYLSNVVLFGACVLRDKSWSPWVIVIGSFFSTCGAGLQSLTGARLLQAIGKAEPTWALLLTA-AIAELGILI-----------A-----SLDLVAPILSMFFLMCYLFVNLACALQTLLRT----------PNWRPRFRY--YHWALSFMGMSICLALMFIS------SWY---------YAIVAMVI-------AGMIYKYIEYQGAEKEW--GDGI----RGLSL---------------- | |||||||||||||
6 | 1zrtC | 0.12 | 0.07 | 0.54 | 0.38 | MRFsearch | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VGLVYDTIMIPPKNLNWWWIWGIVLAFTLVLQIVTGIVLAMHFASVEHIMRDV----------------------NGGWAMRYIHANGASLFFLAVYIHIFRGLYYGAPREITWIVGMVIYLLMMGTAFMGYVITGLFGAIPDNATLNRFFSLHYLLPFVIAALVAIHIWAFHTTGNNNYFVIKDLFALALVLLGFFAVVAYMPNYLGHPDNPLSTPAHI--------VPEWYFLPFYAILRAKFFGVIAMFGAIAVMALAPWLDTKFRMWFWFLVLDFVVLTWVGAMPTEYPYDWIS------------LIASTYWFAYFLVILPLLGATE--- | |||||||||||||
7 | 3aqpA | 0.10 | 0.08 | 0.86 | 0.88 | FFAS-3D | ----------KPWAPEEPKVRLGLDLKG------GLRIVLEADVE-------NPTLDDLEKARTVLENR------INALGVAEPLIQIQGQKRIVVELPVLEFRIVKEGATGTTVAQIGRPQVSLTFTPEQNIGKRLAIVLDGRVYTAPVIRQAITGGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAI--------GPTLGQDAIQ----AGIRSALIGTLAIFLLIFAYLGLVASLGLLYTSALIL------GLLSGLGATL---------TLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLLRRNAVMAVLVGLGLILLYVAFILAVAHDVAIVAGMYSLLGLEFSI---------------PTIAALLTIVGYSINDSIVV-SDRIRENQKLLRHLPYAELVNRSITLSRTVMTSLTTLLPILALLFLGGS-VLRDFALAIFVGIFVGTYSSIYVVSAL---- | |||||||||||||
8 | 7bveA1 | 0.14 | 0.12 | 0.84 | 0.88 | SPARKS-K | PVEQTTAELNWPQN--GVWQSVDAPLIGYV----ATDLTVTVP------C------QAAAGLVRS--------VLLSTVPRGLLIERINNDLTVIVRNTPVVAPLEQVLSPDCRY-------LTFTAHAD---------KVTGEFVGLTQG-----PDDDDPGEAVRGERSGYDFRTDLSGPAPEGLQLSATIDTRYSTSPTLKLLAMIVGVAMTVIALGALHVLDCAGLVSAMLVWWHFVYILTMARVSEHAG----------------YMANYYRSPWYYDLLALWVWMRFPTLLMGLACWWVISREVIPRLGAAGLFLAFWLPLALGILLTWCSVERGVATSRLLPVAVAIIIGALTLPTGIAAVGALLPLKTIVAAHVSRFGYWALLAPIAAAGTVTIFLIFFKSAVG-------------------PSLAWFDEHIRYSRLARRFAVLTLLLALAVSIAMTLRGPSRRIIGITIISFLAMMFTGVFAGLAGCLGALAAVAVT---TTAMKSRRNRTVFGAAVLFVTALSFATVN | |||||||||||||
9 | 3rkoB | 0.12 | 0.07 | 0.59 | 1.50 | CNFpred | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NIGFNLVLDGLS-VTGVGFLIHMYASWY-GYSRFFAYTNLFIASMVVLVLAMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAF--------VVTRVGDVFLAFALFILYNELGTLNFREMVELAPA-NNMLMWATLMLLGGAVGKSAQLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAAYSTMSQIGYMFLA-----------------------LGVQAWDAAIFHLMTHAFFKALLFLASGSVILAC-IPLVYLCFLVGGAALSAAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIH | |||||||||||||
10 | 2uv9D | 0.07 | 0.04 | 0.61 | 0.67 | DEthreader | ------------LQ---------------------HGDI-----YAAGIEPA---------FDPLKARVIVTTSRFSRQVTYYQIY--GARGSQLVVVPFLVNYIYDT-K-GLGWDL-VVPFAAIPEN-----------------------------SKSELAHRIMLTLLRLLGAIKTQKKE-----------LYSWTRGTGLMS---Q---A--------------------LPDWDKDIKPLNDQL------------------R--GMVNL-D-KV----VV-VTGLAEIGWGNARTRWEMEYGKFSEKYILEHSGIPTGWYYVVSVAEALLSIPYEFYYVHLSEVGNCIMAAVTAGGFDDFQ--FA-ATSNAERGREPGEMS-FME-SQ--GC--GV--Q--VI-------ALEMGV-ERARREEAQSFGNEFWPLRGALTIDLGVAAVLGIIVPGNRNADNV------YPSRSIKTDGIKAFSIGVHPKYLFATLD------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |