>PF02862 (208 residues) LNFQPKAFFALGSPIGMFLTVRGLEGLGEDFKFPTCPKFFNIFHPNDPVAYRMEALVSPK MIGVPAVVIPHHKGRKRMHLELKDTMAHVTAALKQKLVDSMRSTWNTVYQLAMFHRPDST IQQEVDKVIEDEILSNNECEPTASNQYLLTEQEALEMKVGKLNDGDRIDYVLQEAPLETF NQYISAVRSHVVYWESEDTMLLILKELY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LNFQPKAFFALGSPIGMFLTVRGLEGLGEDFKFPTCPKFFNIFHPNDPVAYRMEALVSPKMIGVPAVVIPHHKGRKRMHLELKDTMAHVTAALKQKLVDSMRSTWNTVYQLAMFHRPDSTIQQEVDKVIEDEILSNNECEPTASNQYLLTEQEALEMKVGKLNDGDRIDYVLQEAPLETFNQYISAVRSHVVYWESEDTMLLILKELY | |||||||||||||||||||
1 | 6t1tA3 | 0.07 | 0.03 | 0.43 | 0.61 | DisCoVER | LPSTTPVILIGPGTGVAPLFVRER------VQQVNVGKTLLFYGCRNDFL-EYASV----------------------------------------------------------------------------------------------------------LGENFEMFNAFS-RQDPSKKV-YVY--VC-GDASRMARDVQTTIS- | |||||||||||||
2 | 3dtpB | 0.06 | 0.04 | 0.76 | 0.83 | DEthreader | ELFTYLFCVVINPYK--QLPIYS--EKIIDYIYAIAILCTGESGAGKTENTKVKFIRNIETYL-------------------D---------Y--AGFNNYTLSLQLGAKVCMGINDFSILAFAIEALAKAF--FINSQLCNVGQLYKEQLT-KLMTTLRNTNPNFVRCIIPNH--------E--K--RAGKL-DAHLVLEQLRCNVE | |||||||||||||
3 | 3vpzA2 | 0.04 | 0.04 | 0.95 | 0.51 | CEthreader | -------NDFAAFAYAAPYLDSNQNVVIKAGQADENSN-IAVMGPGTGFGAACLVRTAQSSAVLSSEGGHISLAAVTDLDAKLLIELRKEHPHVSLETVFSGPGIAHLYKAMAAVNGITAKHLDAAQISNLANTGECEVCDATLNQFCDWLGSAAGDLALAYGALGG--LFIGGGILPRMQSRLLESRFVERFSQKGIMSQYNGQVPV | |||||||||||||
4 | 1zd4A | 0.08 | 0.08 | 0.93 | 0.77 | EigenThreader | SG---PAVCLCHGFYQIPALAQAGKGYGESSAPPELSQAVFIGHD--WGGMLVWYMAL--FYPERVSLNTPFIPANPNMSPLESIKANPVFDYQLYFQAEAELEQNLSRTFKSLFSRMVTEEEIQFYVQQFKKSGFRGPLNWYRN-----MERNWKWACKLGRKILIPALMVTAFVLVPQMSQHMEDWITQMDK--PTEVNQILIKWL | |||||||||||||
5 | 1bs9A | 0.09 | 0.07 | 0.79 | 0.31 | HHpred | ----------------HVFGARETTASP-GYG------------SSSTVVNGVLSAYPGS--TA--EAINYPACGASYSSSVAQGIAAVASAVNSFNSQSTKIVLVGYSQGGECGGNAVQLSNMVKAAFDPM---FRAGLSGTCAAGGFQRPA----GFSCPSAAKIKSYCDASDPYCCNG---SNAATHQGYGSESQALAFVKSKLG | |||||||||||||
6 | 6kzsA | 0.12 | 0.11 | 0.87 | 0.40 | MRFsearch | ----EGEAWLVTRYEDVRTVTTDRRFSRSAVLGRDFPRMESINLMDPPASSRLRGLVAKSF-----------------TPRRVEQMRGGTQRVVDRLLDEMEWLRAHAMTMMNVGQDAVRAKAELRGYFQELTADRRRLATARDGDELLDDDELAVMAMVLL-------ITGQDTTTYQLGNIAYTLLTRPDLLRSPQRLPRTLEELL | |||||||||||||
7 | 5zwnY | 0.10 | 0.08 | 0.82 | 0.50 | FFAS-3D | MGPKICKSYLVGCPYDLF--------QGTKQSLGKCPQM----H---------LTKHKIQYEREV----KQGKTFPEFEREYLAILSRFVNECNGQISVALQNLKHTAEERMKI------QQVTEELDVLDVRIGLMKLQELISKRKEVAKRVRNITENVGQSAQQKLQYLSRLDTDRRLADHF-LGKIHLGYVKMRED----YDRL- | |||||||||||||
8 | 4ewcA | 0.13 | 0.12 | 0.96 | 0.62 | SPARKS-K | VTANGKVKQVEVNLNDLKAAFRQSRPKRSDYRKATESSISNQCALIK-SVLSADQLFAPGVKRAEGANIPYLRHRNCGGVALKRIKNKIFSIIQKKVRGRCRTEEQRLLTSALKISDGENKFQRIDTLCTSFLIDPPRTQEGNSVLADFKNGEDACKICRELK-------VGVNSTFTSVARTCVAVSVATAFC-SADIIENAVPGSE | |||||||||||||
9 | 1h1lA | 0.07 | 0.05 | 0.70 | 0.69 | CNFpred | MGLRVVAQWSGDGTLVEMENTP--------------FVKLNLVH-CYRSMNYIARHMEEKH-QIPWMEYNFF-----GPTKIAESLRKIADQFDDTIRANAEAVIARYEGQMAAI----------------------------------------IAKYRPRLEGRKVLLYMGGLRPRHVIGAYEDLG-AGYEFAHNDDYDRTLPDLK | |||||||||||||
10 | 3gqnA | 0.05 | 0.04 | 0.80 | 0.83 | DEthreader | DKFGVS--------VK-YGAKGD------RAFKAIVTVLT-VIRF-MDSVESLMY-NENVT--SRESTLHGHDPGGCYEDVRSVLAVVSVLIVVNIVSIPEILF-NGAFRGFIMGCESSSSTSGSLGASQSSYGGGKINW-KARDTV------T--GGNTWSD----EYFESLGGQ----EKKIRKAEEAVGGATDGDN-FIV--QEI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |