>PF02653 (281 residues) MFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMLGIDVGWM LVGAGFIGAIIIASAYGWSIERVAYKPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDI ALPSLFNGQWIVGASDNFTATITTMQLVIWVVTFLAMLALTLFIRYSRMGRACRACAEDL KMASLLGINTDRVISLTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGI GSIPGAMIGGLILGVAEALTSAYLSTEYKDVVSFALLIVVL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMLGIDVGWMLVGAGFIGAIIIASAYGWSIERVAYKPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDIALPSLFNGQWIVGASDNFTATITTMQLVIWVVTFLAMLALTLFIRYSRMGRACRACAEDLKMASLLGINTDRVISLTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVAEALTSAYLSTEYKDVVSFALLIVVL | |||||||||||||||||||
1 | 4g1uA | 0.15 | 0.12 | 0.83 | 1.17 | DEthreader | SRRVLLAVVVGCALAVSGTIMQGLFRNPLADPGGISSGAALCVGLIIVM---------L-ALYSHMVGAFIGSLAISTIIFTLSRWGHG-----N-LARLLLAGIAINALCGAAVGVLTDQLRQF----------------LGQAQWSTLLVASSLILPTCILGLL--QARQLNLLQLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAVSG---------V---IGFIGLVVPHLIRAHLLPGAALGGACLLLTATLARTLVAMLLTSLLGGPYFWL-- | |||||||||||||
2 | 2nq2A | 0.15 | 0.13 | 0.86 | 1.27 | SPARKS-K | LPRILTALCVGAGLALSGVVLQGIFRHI-IGVTSGSAFGGTLAIFF-------GFS----------LYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQYISD-------TEEKLPSIVFWLMGSSNWEKLLFFFVPFLLCSSILLSLSW-----RLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGGLIIPHLSRMLVSLLPCTMLVGATYMLLVDNVARSLISILTALIGAPLFGVLVYKL--------- | |||||||||||||
3 | 4g1uA | 0.14 | 0.12 | 0.87 | 1.26 | MAPalign | -PRVLLAVVVGCALAVSGTIMQGLFRNLAD-PGGISSGAALCVGLII----------VMLALYSHMVGAFIGSLAISTIIFT-LSRWG-HGNLARLLLAGIAINALCGAAVGVLT---------YISDDQQLRQFSLWSMGSLGQAWSTLLVASSLILPTCILGL--LQARQLNLLQLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAVSG----------V--IGFIGLVVPHLIIDHRLPGAALGGACLLLTADTLARTLAEMPVGLLTSLLGGPYF | |||||||||||||
4 | 4g1uA | 0.17 | 0.16 | 0.92 | 1.28 | HHsearch | VQPRLMLGFLLILLVIALGSANMWHIWLNILLAVVVGCALAVSGTIMQGLFRNPADPGLLALYSHMVGAFIGSLAISTIIFT-LSRW-GHGNLARLLLAGIAINALCGAAVGVLTISDDQQLRQFSL---WS----MGSLGAQWSTLLVASSLILPTCILGL-----LQARQLNLLQLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAV----SGVIG-FIGL--VVPHLIRMRIGA--DHRWLLPGAALGGACLLLTADTMPVGLLTSLLGGPYFLWL | |||||||||||||
5 | 4g1uA | 0.14 | 0.12 | 0.83 | 1.17 | DEthreader | ALRVLLAVVVGCALAVSGTIMQGLFRNPLADPGGISSGAALCVGLIIVM----------LALYSHMVGAFIGSLAISTIIFTLSRWGH----G-N-LARLLLAGIAINALCGAAVGVTQLRQF--------SLGQ-----AQWSTLLVASSLILPTCILGL-LQ-----ARQLNLLQLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAVSG---------V---IGFIGLVVPHLIRAHLLPGAALGGACLLLTADTLARTLVMLLTSLLGGPYFLWLI | |||||||||||||
6 | 1l7vA | 0.12 | 0.10 | 0.81 | 1.00 | DEthreader | SRRTLAVLLVGAALAISGAV-QALFENPLAEPGGVSNGAGVGLIAAVLLGQG----QLP-NWA-LGLCAIAGALIITLILLRFARRHL-------STSRLLLAGVALGIICSALTWIYSVDQ-----GG------------VDWRQSWL-LALIPVLLWICC-QS-----R-PN-LALGEISARQLGLPLWFWRNVLVAAT-GWVGVSVALAG---------AI--G-FIGLVIPHILRTHLLPGCALAGASALLLADIVALALLPVVTATLGAPVFWLKA | |||||||||||||
7 | 4g1uA | 0.15 | 0.13 | 0.86 | 1.23 | SPARKS-K | VLLAVVVGCALAVSGTIMQGLFR-----NLADPGLL---GISSGAALCVGLIIVMLALYSHMVGAFIGSLAISTIIFTLSRWG------HGNLARLLLAGIAINALCGAAVGVLTYISD-------DQQLFSLWSMGSLGQAQWSTLLVASSLILPTCILGLLQA-----RQLNLLQLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAVSG----VI--------GFIGLVVPHLIRMRIPGAALGGACLLLTADTLARTLVAGLLTSLLGGPYFLWLI | |||||||||||||
8 | 5b57A | 0.14 | 0.12 | 0.89 | 1.16 | MAPalign | APRVVLALLVGGGFGATGAAMQALFRNPADPGVGVSSGAALGATTLIV--------LGPASAAALPVAAFAGGLAVAALVYRLAASRGR-LALPLLLLAGIAINALVGAAIGLLT----FVADDAQLRSLTFWSLGSLGGAQWPTLAAVAPCVALGGVLLV------RERDALNALQLGETEALHLGVPVQRLKRRVLVAVALAVGALVSCAG------------IIGFIGLVAPHCVCQRVLPGAALLGALLTLAADAARTVAADIPLGVLTALLGAPFF | |||||||||||||
9 | 5b57A | 0.14 | 0.13 | 0.93 | 1.26 | HHsearch | APFVLAALAILMGAMSVVALCVGDIRAPRVVLALLVGGGFGATGAAMQALFRNPADPGLLGATTALPVAAFAGGLAVAALVYRLAASRGRLALPLLLLAGIAINALVGAAIGLLTVADDAQLRSLTF---WS----LGSLGAQWPTLAAVAPCVALGGVLLV-----RERDALNALQLGETEALHLGVPVQRLKRRVLVAVALAVGALVSC----AGII-GFIGL--VAPHCVRLACGP-DQPGAALLGALLTLAADLAARTVIPLGVLTALLGAPFFLAL | |||||||||||||
10 | 1l7vA | 0.12 | 0.10 | 0.82 | 1.17 | DEthreader | LLRTLAVLLVGAALAISGAV-QALFENPLAEPGGVSNGAGVGLIAAVLLGQG----QLP--NWALGLCAIAGALIITLILLRFARRHL--S-TSRLLLAGVALGIICSAL-TWAIYFTSVD-----------FGG-----VDWRQ-SWL-LALIPVLLWICC-QS----RP--N-LALGEISARQLGLPLWFWRNVLVAAT-GWVGVSVALAG----------A--IGFIGLVIPHILRTHLLPGCALAGASALLLADIVARLALLVVTATLGAPVFIWLL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |