>PF02447 (437 residues) MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGS LALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVGFVL MLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGPTAIATIFNADMGKTLLYGTI LAIPTVILAGPVYARVLKDIDKPIPEGLYSAKTFSEEEMPSFGVSVWTSLVPVVLMAMRA IAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIA MMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNISPLLMAWSIAAVLRIALGSATVAAIT AGGIAAPLIATTGVSPELMVIAVGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLE TIISVCGLVGCLLLNMV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGPTAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKDIDKPIPEGLYSAKTFSEEEMPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNISPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMV | |||||||||||||||||||
1 | 6wtwA | 0.11 | 0.10 | 0.94 | 1.17 | DEthreader | PGGLSAWEMFAIFVATIVGKPGTTLLGMVVTVLVGLA-----VVN-VVIQTGI----SSFGNSAAWLIAMAFIMAHGISLGNRVAYVMIEKFGKRGIGYAITGLELMMGAISNSTGVTWPVVESISKSYDSSKKIGAYLDFMAFHANILSTAFITGAAPNLVAQQMAAQYQMSWVSWFALVPVLVATVIIPLVIYKMYPPEVKETPNAWADDKLMGPISKPEKIMATVFCLAILLWVLSGF-F--------------KIPQLD-SAFVAFLAVTLLLITG-VLSMEDALHE-TGAWNILIWLSILIFMAGKLISYGFIAWFAKFIQSEVHGINWGVLVVLILLMFYTHYFFASGTAHMTALYLPFLTVATAMAPLGLSAMLLAFTGVINASTTHYAPASILATTGYVKQSEWWKMNFILGLIYMVIFGIVGTIWMKG | |||||||||||||
2 | 6wtwA | 0.13 | 0.13 | 0.95 | 1.33 | DEthreader | GGLSVAWEMFAIFVATIVGCKITTLLGMVVTVLVGLA-----DVVNVVIQTGILSSFGNSAAWLIAMAFIMAHGISKTGLGNRVAYVMIEKFGKRGIGYAITGLELMMGALISNSARTGGTWPVVESISKSYDKIGAYLDFMAFHANILSTALFTGAAPNLVAQQMAAYQMSSWFWAALVPVLVATVIIPLVIYKMYPPEVKETPNAKNWADKLEMGPISPEKIMATVFCLAILLWVLSGF-------------FKIPQLDSAFVAFLAVTLLLIT-GV---LSMEDALHE-TGAWNILIWLSILIFMAGKLISYGFIAWFAKFIQSEVHGINGLVLVVLILLMFYTHYFFASGTAHMTALYLPFLTVATAMGALGLSAMLLAFTGVINASTTHANPASILATTGYVKQSEWWKMNFILGLIYMVIFGIVGTIWMKI | |||||||||||||
3 | 4r0cA | 0.15 | 0.14 | 0.93 | 3.46 | HHpred | --------------------LPHPTLLFVWFCLLLLPLTDVTAADGLRYLFTTLVGNFTGFVLVAMLGL---GVAEQSGLLSVSLASLVRRSSGGALVFTVAFAGVLS--SLTVDAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGANLLVGPVDATLAAHIITVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLV-----LPNDAPLRHPSPFIHGLVVIVALIAGICGAVYGRVSGRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAAWLGALTVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASAYRVGDSSTNIITPLMPYFVLVLGFAETGIGTLIALMLPYSLTLLLGWSVLLGVWIGF | |||||||||||||
4 | 6wtxC | 0.15 | 0.14 | 0.89 | 1.22 | DisCoVER | HNVVLGIFIAVLWL----TEALHVTVTAILVPVMAVFFI-F---ETQAALN-NF--AN-SIIFLFLGGFALAAAMHHQGLDKVIADKVLAAQGKMSAVFMLFGVTALLSMWISNTATAAMMLPLVLGVL-SKVSTYVFVLLGVAYSASIGGIATLVGSPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLL--KPTLNG-MFELDRAPV---NWGKVVTLGIFGLTVFLWIFSSPIN-------AALGGFKSFD-TL-VALGAILMLSFAV-----V---HWK-EIQKT--ADWGVLLLFGGGLCLSNVLKQTGTSVFLANALVMGIFVVILVVATFVVFLTE-FASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASCAFMLATPPNAIVFASH-IKQSEMMRVGLYLNIACIGLLTAIAM----- | |||||||||||||
5 | 6wtxC | 0.15 | 0.14 | 0.92 | 0.47 | MRFsearch | --VVLGISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNF-------ANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQFVLLGVAYSASIGGIATVGSPPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTL----NGMFELDRAPVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGG------------FKSFDTLVALGAILMLSFARV-VHWKEIQKTA------DWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMHMGIFVVILVVATFVVFLTESNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASCAFPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLFWQ- | |||||||||||||
6 | 6wtxC | 0.14 | 0.13 | 0.93 | 2.21 | SPARKS-K | HNVVLGISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNFAN-------SIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKVAVFMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVDADYVFVLLGVAYSASIGGIATLGSPPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYF--LLKPTLNGMFELDRAPVNWDKG--KVVTLGIFGLTVFLWIFS-------------SPINAALGGFKSFDTLVALGAILMLSFARVVHWKEIQKTADW------GVLLLFGGGLCLSNVLKQTGTSVFLANALSDMHMGIFVVILVVATFVVFLTEFNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASCMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLFWQ- | |||||||||||||
7 | 6wtxC | 0.15 | 0.14 | 0.93 | 1.42 | MAPalign | RNSLIVLADVALFLALYHFLVV-LGISMLAFIAVLWLTEALHVTVTAILVPAFALNNFASIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAKMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVRSTYVFVLLGVAYSASIGGIATLGSPPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILY-FLL-KPTLNG-MFELDRAP-VNWDKGKVVTLGIFGLTVFLWIFSSPINA---------ALGGFKSFDTLVALGAILMLSFAV----------VWKEIQKT--ADWGVLLLFGGGLCLSNVLKQTGTSVFLANALVMGIFVVILVVATFVVFLTEFA-SNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASCAFLPATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLFW-- | |||||||||||||
8 | 6wtwA | 0.12 | 0.12 | 0.96 | 0.95 | CEthreader | VQAWEMFAIFVATIVGCITKPLPIGGTTLLGMVVTVLVGLAPVKDVVVIQTGILSSFGNSAAWLIAMAFIMAHGISKTGLGNRVAYVMIEKFGKRGIGYAITGLELMMGALINSARTGGVTWPVVESISKSYDSKGAYLDFMAFHANILSTALFIGAAPNLVAQQMAQMSWVSWFWAALVPVLVATVIIPLVIYKMYPPEVKETPNAKNWADDKLKEMGPISKPEKIMATVFCLAILLWVLSGF----------FKIPQLDSAFVAFLAVTLLLITGV---------LSMEDALHETGAWNILIWLSILIFMAGKLISYGFIAWFAKFIQSEVGLVLVVLILLMFYTHYFFASGTAHMTALYLPFLTVATAMGAPLGLSAMLLAFTGVINASYANGPASILATTGYVKQSEWWKMNFILGLIYMVIFGIVGTIWMKI | |||||||||||||
9 | 4r0cA | 0.13 | 0.13 | 0.98 | 1.39 | MUSTER | LLFVWFCLLLLPLTAVLGALDVTATH----TITAHSLLDADGLRYLFTTLVGNFTGF--APLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGGALVFTVAFAGVLSSLT--VDAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSANLVGPVDATLAGLSTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLAPLRHPDTGSVLGSPFIHGLVVIVALIAGICGAVYGRVSGQFNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIILMPYFVLVLGFARTGIGTLIALMLPYSLTLLLGWSVLLGVWIGF | |||||||||||||
10 | 6wtwA | 0.13 | 0.12 | 0.93 | 4.30 | HHsearch | VQAWEMFAIFVATIVGCITKPLPIGGTTLLGMVVTVLVGLAPVKGILSSFG-------NSAAWLIAMAFIMAHGISKTGLGNRVAYVMIEKFGKRGIGYAITGLELMMGALISNSARTGVTWPVVESISKSYDSKPNYLDFMAFHANILSTAFITGAAPNLVAQQMYQMSWVSWFWAALVPVLVA-TVIIPLVIYKMYPPEVKETPNAKDKLKEMGPISKPEKIMATVFCLAILLWVLSGFFK----I--------PQ-LDSAFVAFLAVTLLLIT----GVLSMEDALHTGA------WNILIWLSILIFMAGKLISYGFIAWFAKFIQSEGINWGLVL-VVLILLMFYFASGTAHMTALYLPFLTVATAMGAPLGLSAMLLAFTGVNATHYANGPASILATTGYVKQSEWWKMNFILGLIYMVIFGIVGTIWMKI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |