>PF02009 (346 residues) PNTRSLCECKLYSPANYDSDPEMKSIMQQFEDRTTQRFHEYDERMKTTRQKCKEQCEKDI QKIILKDKLEKELMDKFATLQTDIQNDAIPTCICEKSLEDKMEKECLKCAQNLGGIVAPS TGVLGEIAALAVNAWKTTEIAAATQEAIAKGLALGKIAGEAAGVAKVIDLVKSTFKIEEL GGQSFESFFTATSYKKVASITQALYDEYADICLPRFTAFGTVRGVRYNSSSPICTFVEEG ILATSRGKGGSPIEFIGKKVETMVSKAEGVATARAADVAAAEKAEILETSTKAIETTTTP YYTPIIVSIVAIVVIILTMVIIYKILRYRRKKRMKKKLQYIKLLEE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | PNTRSLCECKLYSPANYDSDPEMKSIMQQFEDRTTQRFHEYDERMKTTRQKCKEQCEKDIQKIILKDKLEKELMDKFATLQTDIQNDAIPTCICEKSLEDKMEKECLKCAQNLGGIVAPSTGVLGEIAALAVNAWKTTEIAAATQEAIAKGLALGKIAGEAAGVAKVIDLVKSTFKIEELGGQSFESFFTATSYKKVASITQALYDEYADICLPRFTAFGTVRGVRYNSSSPICTFVEEGILATSRGKGGSPIEFIGKKVETMVSKAEGVATARAADVAAAEKAEILETSTKAIETTTTPYYTPIIVSIVAIVVIILTMVIIYKILRYRRKKRMKKKLQYIKLLEE | |||||||||||||||||||
1 | 6zdxA | 0.21 | 0.06 | 0.28 | 1.50 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------MNYETINAFIAKTIEELEGIPGITKLFGAKISQFVTPAVFRKPMSLVETILSEKKKLCLC-AAN----------KNELLCRGMNPNVP------------------ETLPKKIEVAVNEVLSSVND------------------------------------------------------------------ | |||||||||||||
2 | 4qszA1 | 0.09 | 0.06 | 0.62 | 0.70 | DisCoVER | LVIWINGDK-GYNGLAKVTV-EH--PDKLEEKFPQVAA------------------------G----------------D-G-P----DIIFWAH---------DRFGGYAQSGLLAEIAVRLIAYPIA--V--EA---L--SL--IY--NK-DLL-KSA-LM--FN--LQ-------------------------EPYFTWPL--IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNA------DT--DYSIAEAAFGETAMTVN--YG--VT-VLP-KPF-VG--VL--SA-GI--NA-ASPNKDKPLGAVALK---ENAQKGEIMPNIP- | |||||||||||||
3 | 5oybA | 0.04 | 0.03 | 0.66 | 0.67 | DEthreader | ---------G--EEEE------PAYFTNLVSIWLIEFKALLFVNSYTPIFYVAELCIQLSIIMLGKQLIQNNLF--EIGIPKMKKEPFAGLTPEYMEMII-----------RLDAKKFVTLRRPVAI-RAKD--IG-IWYNILRGVGKLAVIINAFVISFTS-DFIPRLVYLYMYSMHGFVNHTL------------------S--SFN-VSDF-----TAPNPLLGEVQICRYKDYREPPW-----SEHKYDI-S-KDFWAVLAARLAFVIVFQNLVMFMSDFVD--VIPDIPKDISQQ---------------------------------------------- | |||||||||||||
4 | 2w6dA | 0.09 | 0.09 | 0.97 | 0.48 | CEthreader | DSLNTFLTRERAIAELRQVRTLARLACNHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRYQPELNLFDFLSSGKREAFNAALQKAFEQYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQITEKLTGKDLLSLSKGNLAGFIGGIITAVTGILLGPIGFALLGLGVGFLQADQARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNLLAYYSHH----------- | |||||||||||||
5 | 2w6dA | 0.05 | 0.05 | 1.00 | 0.97 | EigenThreader | PEKKVTIHFNDGKSPQQLDFQNFKYKYGERRYLENYIDQVRESLEELQASENRLRQVFNANLAEYCIQALRRRLKNFMDSLNTFLTRERAIAELRQVRTLARLACNHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRYQDFLSSGKREAFNAALQKAFSQYGASYNQITDQITEKLTGKDVEDNSPGWAKWAMLLGLGVGFLQADQAAKKELVKHLPQVAHEQSVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTRESEFNRLKNLQEDVIAQLQKIEAAYSNLLAYYSHH | |||||||||||||
6 | 2jwaA | 0.23 | 0.03 | 0.11 | 0.56 | HHpred | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK----------- | |||||||||||||
7 | 6ezvX1 | 0.10 | 0.06 | 0.63 | 0.53 | MRFsearch | ---------------KPDWFDDLSKKLDSAKLVAKQWIDDLGPQVSASVSGIEATVKGMNKELSDWGVKMQAAHDDLVNG---------------------------------------ATNIQKTIIDLQTDIESMNNAIDNNRAAIEKLNKDLVYAQVAVGVGIFMLVAGVALTVATAG--------------TAAAVSGGIAAV----------------------------------------------GAAGVTWGVLQNQIDDDYDSIAQEQKQKAEDQQQIIALQGLSNASSAVVSAIETSTSVLSDFETTWTKI--------------AIETKELAPA | |||||||||||||
8 | 6xnsA | 0.15 | 0.12 | 0.79 | 0.90 | FFAS-3D | -----------------DHAKKLKTFLENL-RRHLDRLDKHIKQLRDILERVKDVIDLSERSVIFEDKLLKQINKEAEELAKSPDPEDLKRAV---ELAEAVVRA--DPGSNLSKKALE---IILRAAAELAKLPDPDALAAAARAASKVNLAKAAQEIMRQASRAAEEAARRA----------KETLEKAEKDGDPETALKAVETVVK-----------------------VARALNQIATMAGS-------EEAQERAARVASEAARLAERVLELAEKPEVARRARELQEKVLDILLDILEQILQTATKII-----DDANKLLEKLRRSERKDPKVTYVELLKR | |||||||||||||
9 | 6r9tA | 0.08 | 0.08 | 0.97 | 0.91 | SPARKS-K | AMEPIVISAKTMLESAGGLIQTARALAVNPDPPSWSVLAGHSRTVSDSIKKLITSMRLECETAIAALNSCLRDLDQASLAAVSQQLAPREGIS-QEALHTQMLTAVQEISHLILANAARAEASQLGHKVSQMAQYFEPLTLAAVGAASSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAH---TQEALEEAVQMMTEAVEDLTTTLNEAASAA-----GVVGGMVDSITQAINQLDEGPMGEPEGSF---VDYQTTMVRTAKAIAVTVQEMVTKSNANQLTSDYGRLASEAKPAAVAAHIKHRVQELGHGCAALVTKAGALQCSPSDAYTKKELIECARR | |||||||||||||
10 | 4fgvA | 0.10 | 0.08 | 0.86 | 0.94 | CNFpred | ---------------------NIGKITCDLTPQQVHTFYEACGYMVSAQ-GNRNQQERLLAELM--AIPNAAWDEIIKAATM--------PGILHEPDTIKIIGNIMKTNVSACSSIGPYFPQIGRLYNDMLQMYAAT--SQLISEAVARDGEIATKMPKVRGLRTIKKEILKLVETFVEKAEDLQAVRSQ----MIPGLLDSVLVDYNRNVP-------GARDAEV---LKAMTVIITRLQGLMEDQVPAIMENVFECTLDMINKDYPEHRVEFFNLLRAINLYCFPALLKLDNRQFKFVIDSCMWASVETAGLNMCLELINNIAEKTDVQTCNAFFFFIRILQD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |