>PF01970 (419 residues) LLACFVGVFVGTLIGVLPGLGPVATMSLLLPATFVMTPTASIIMMAGIYYGAMYGGSTTS ILVNIPGEAASVVTCLDGYQMARQGRAGPALGIAAFGSFIAGTLGVLGIMLLSPPLAAAA LRFGPPEIFTLLLLGFTMITYLGSGSRLKAVAMAFAGMLLGTVGLDPVTATPRFTFDTVT LSDGVGLVPMIMGLFGVTEVLVNVEAGLKQEVFQTKIRHLLPTRQDWKDSAAPIARGSVL GFALGILPGVGAIIPTFVAYALEKRLSKRPETFGRGAIEGVAAPESANNAATAGSMIPLL TLGIAPNVVMAVLLGAFLVHGVQPGPLMLREHPELFWGVVASMYVGNVLLLVLNLPLIGL WVQILKVPYGLLFPLILLVCMIGVYGVSDNIWDVVIMLAFGGLGWLMRKTGFEAAPMVL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LLACFVGVFVGTLIGVLPGLGPVATMSLLLPATFVMTPTASIIMMAGIYYGAMYGGSTTSILVNIPGEAASVVTCLDGYQMARQGRAGPALGIAAFGSFIAGTLGVLGIMLLSPPLAAAALRFGPPEIFTLLLLGFTMITYLGSGSRLKAVAMAFAGMLLGTVGLDPVTATPRFTFDTVTLSDGVGLVPMIMGLFGVTEVLVNVEAGLKQEVFQTKIRHLLPTRQDWKDSAAPIARGSVLGFALGILPGVGAIIPTFVAYALEKRLSKRPETFGRGAIEGVAAPESANNAATAGSMIPLLTLGIAPNVVMAVLLGAFLVHGVQPGPLMLREHPELFWGVVASMYVGNVLLLVLNLPLIGLWVQILKVPYGLLFPLILLVCMIGVYGVSDNIWDVVIMLAFGGLGWLMRKTGFEAAPMVL | |||||||||||||||||||
1 | 4r0cA | 0.11 | 0.09 | 0.77 | 1.27 | EigenThreader | GALVFTVAFAGVLSSLTVDAGYVVLIPLAGLVFQLAGR-PPIAGIATAFAAVSGGFSAN-----LLVGPVDATLAGLSTEAAHIIDP-----DNYWFIIASTFLVTGLVTLITRTRAMKWTGLTLAILLAGLALLVLFIHG-----LVVIVALIAGICGAVYGRVS----GQFRN---SGAVITAMEVTMASMGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGALVVLLLLFVVLTALINLMI--GSASAKWSILAPVFIPMLMLL------GISPEASQAAYRVGDSSTNIIT-----PLMPYFVLVLGFARRYQPETG-----------IGTLIALMLPYSLTLLLGWSVLLGVWIGFGWPLGP------------------------------------------------- | |||||||||||||
2 | 5t77A | 0.12 | 0.10 | 0.88 | 1.13 | FFAS-3D | -ILFSIATFFSRILGLF--------RDVLFAKYFGVSYELDAYFIAIM---------FPFFLRKVFGEGAMSSAFVPLYSEKSGEEKDKFLSSVINGFSLIILALVILSYFFPELIINLLLITSPSIYFIFLWAISYSILNTNNKFFWPALTPSISNITIIIGTFLSTK------YGIISPTIGFLIGSILMFFLFFPTFMTMVV-------------------SQINTVVDMNVVSSYLQYASRFYLLPYGLFAVSVSTVVLSKISNDRKNFNYHLNDIFLSTPIIRDTLITSKILIAYTLGLPFYGIYSTISRSYHAIKNTKTPFIAATIVSLSNIILDIIFGGVALATSIAGIIGVLYLSVKTFPIKDFLKISLNSLIMLFVIYLTNEFWFLIQILIGILVYLIFSS--------- | |||||||||||||
3 | 3l1lA | 0.11 | 0.10 | 0.90 | 1.37 | SPARKS-K | AHKVGLIPVTLMVSGAIMG----SGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGS-------YAYARRCFGP---FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAIQSTLNVTLWSFIGVESASVAAGVVKN--------------------PKRNVPIATIGGVLIAAVCYVLSTTAIMGMFGDAARMALG-DTAGAIVSFCAAGCLGSLGGWTLLAGQTAKAAATPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGH-----GHFPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPY | |||||||||||||
4 | 5gpjA | 0.10 | 0.09 | 0.93 | 1.63 | CNFpred | AIFSTVSFLLGGVTSLVSFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLL-----VLYIAINLFKIYYG--DDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGAPRNPAVIADNVGDNVGDIA--GMGSDLFGSYAESSCAALVVASIS------SFGLNHELTAMLYPLIVSSVGILVCLLTTLFAT----DFFEIKAVKEIEPALKKQLVISTVLMTIGVAV-LCVAVGLWAGLIIGFVTEYYTS----------NAYSPVQDVADSCRTGTNVIFGLALGYKSVIIPIFAIAISIFVS-FTFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRASITTVDVLT | |||||||||||||
5 | 6okzC | 0.11 | 0.08 | 0.72 | 1.02 | EigenThreader | KMSVAVFMLFGVTALLSMWISNAAMMLPLVLGVLSKVDSTYVFVLLGVAYSASIGGIA------TLVGSPPNAIAAAEVG----LSFTDWMKFGLPTAMMMLPMAIAILYFLLK----------PTVTLGIFGLTVFLWIFAALGGFKSFDTLVALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMG---------IFVVILVVATFVVFLTEFA------SNTASAALLIPVFATVA---EAFGMSPVLLSVLIAVAASCAFM---------LPVATPPNAIVFA------SGHIK------QSEMMRVGLYLNIACIGLLTAIAMLFWQ----------------------------------------------------------- | |||||||||||||
6 | 3mktA | 0.11 | 0.10 | 0.88 | 1.12 | FFAS-3D | LIKLATPVLIASVAQTG----MGFVDTIMAGGVSAID-------MAAVSIAASIWLPSILFGVGL----LMALVPVVAQLN-GAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTMATKTVGYMHAVIFAVPAYLLFQALRSTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE------LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHHKPQPKELIRLFRLGTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKG-------------AAIAANVGLMTGLATACIT------ALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGMTAIFHRTFISYWVLGLPTGYILGMTNWLTEGAKGFWLGFIIGLSAAALMLG--------- | |||||||||||||
7 | 5t77A | 0.09 | 0.08 | 0.88 | 1.33 | SPARKS-K | FFSRILGLFRDVLFAKYFGVSY---------------------ELDAYFIAIMFPFFLRKVFGE--GAMSSAFVPLYSE--KSGEEKDKFLSSVINGFSLIILALVILSYFFPELIINLFGLITSPSIYFIFLWAISYSILNTNNPSISNITIIIGTFISPTIGFLMFFSIIKSIIKHMVVSQINTVVDMNVVSISYLQYASRFYLLPYGLFAVSVSTVVLSKKNFNYHLNDALKTTLFFTIPSMVGLIFLSTPIIRFFYE--------HGAFTS------------KDTLITSKILIAYTLGLPFYGIYSTISRSYHAIKNTKTPFIAATILKYPIGVALATSIAGIIGVLYLLFSVKTFPI-----KDFLKISLNSLIMLFVIYLNEFWFLIQILIGILVYLIFSSIFYRDLIRRFL | |||||||||||||
8 | 3rkoB | 0.10 | 0.08 | 0.84 | 1.63 | CNFpred | LVLDGLSLTMLSVVTGV------GFLIHMYASWYMEEGYSRFFAYTNLFIASMVVLVLADNLLLM--YLGWEGVGLCSYLLIG-PKNGAAAMKAFVVTRVGDVFLAFALFILYLNFREMVELA-LMWATLMLLGGAVGKSAQLLQTWLADAMAGPTPVSALIHA----------------------ATMVTAGVYLIARTHGLFLM--------------------TPEVLHLVGIVGAVTLLLAGFAALQTDIKRVLAYSTMSQ-------------IGYMFL-ALGVQAWDAAIFHLMTHAF--FKALLFLASGSVILACQNIFKMGGLSIPLVYLCFLVGGAALSALPTAGFFSKDEILAGAMMVAGLVGAFMTSLYTFRMIFIVFHG-GVTHSLPLIVLLILSTFVGALIVPPLQ | |||||||||||||
9 | 6idpA | 0.13 | 0.11 | 0.89 | 1.10 | FFAS-3D | ---TSTSSLAKQLFQMWP-----MLFGVLSLMSFQLVDSAFILPLAAQGFTMPIQMVIIGIQVGL----GIATTAVISRAI-GAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDLG-------IDGAAIATIIAFGVGIAIVAPKVAQRQWTSYQWQDLNISQSLTALGHAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLG---AKEITH----------IRQLVRIACQFVLGFQLLI------ALVTYVFATPLAELMTSETEVSQILNLHLVIVPISLGALGICMLMVSVANASYVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAGWAAWLAYQ--------- | |||||||||||||
10 | 3gi9C | 0.12 | 0.11 | 0.89 | 1.33 | SPARKS-K | SLWEAVSMAVGVMIGASIFSIFGVGAKIAG-------RNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAILWMSYVISIALFAKGFAGYFNIAITEIGIVAFFTALVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE--NALAVAAKPFLGN--LGFLLISIGALFSISSAMNATIVAYSLAKDG-ELPEFFERKVWF------------------------KSTEGLYITSALGVLFALLFN-----------MEGVASITSAVFMVIYLFVILSHYILIDEVGGRIVIFSFIVVLGVFLLLLYYQWNRFVFYGIIATFIGVLIFEIIYRKVTKRTF | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |