>PF01837 (358 residues) AVVVTAEEMIGIVEEKGYTKAAEEVDVVTTGTFGPMCSSGAFLNFGHSNPRIRMKRVWLN GVEAYSGIAAVDAYIGATQLPENDPENKVYPGKFVYGGGHVIHDLVARKMIRLEAVSYGT DCYPRKKIETMITLDDLNEAYLYNPRNAYQNYNCAVNLGNRTIYTYMGILKPNLGNASYS SAGQLSPLLNDPYYRTIGIGTRIFLGGGIGYVAWYGTQHHPNVPRAENGVPLGGAGTLAV IGDLKQMSPEWLVGASFIGYGASMYVGLGIPIPILDEEMVRYTAVKDEEILCPVVDYSEG YPYCKPIDLGYVNYRDLKSGKVTIRGKEVPTTPMSSYPRARKIAEILKEWIKSGRFEL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AVVVTAEEMIGIVEEKGYTKAAEEVDVVTTGTFGPMCSSGAFLNFGHSNPRIRMKRVWLNGVEAYSGIAAVDAYIGATQLPENDPENKVYPGKFVYGGGHVIHDLVARKMIRLEAVSYGTDCYPRKKIETMITLDDLNEAYLYNPRNAYQNYNCAVNLGNRTIYTYMGILKPNLGNASYSSAGQLSPLLNDPYYRTIGIGTRIFLGGGIGYVAWYGTQHHPNVPRAENGVPLGGAGTLAVIGDLKQMSPEWLVGASFIGYGASMYVGLGIPIPILDEEMVRYTAVKDEEILCPVVDYSEGYPYCKPIDLGYVNYRDLKSGKVTIRGKEVPTTPMSSYPRARKIAEILKEWIKSGRFEL | |||||||||||||||||||
1 | 2qmiA1 | 0.11 | 0.07 | 0.64 | 0.77 | DisCoVER | VPGISIS-II--K----DGDVVYFGYRPTIYGIGSITKSFTALAIKLVGLSLDPVEFVIKLRPFGEPV-TVHHLLTHSSGIPMEKWAVAKPGERFFYLNTGY---------VLLGKI-IEKVSGVSYEEY------IKKKILRSYFGYIQPFPY--------GITAD----------GGLLSSVLDLAKYLKMYIE--RDE-----SIVSKEYIEKMETSYIKVPWEIFGGEGY-GY----------------GLIIKLVGHSGSVGMYTGIGYIPEKKI--GVA------------------------------------------------------V---L--EN--SSGYPPS- | |||||||||||||
2 | 6j3aA | 0.08 | 0.05 | 0.63 | 0.67 | DEthreader | ----RPTLQ-G-------------T--GMVSSTHEHLNGGEQGVAPATVDLVPGTGP--------LAA--AVPGAFAVVRLFETEWTSAVYLPRNPTLAATWKLLIAEVGAEVARPTMDTSGERHTGTLTAADLAGWSATY----------------------------------------------T--DWNGWTVCK------------AGPWSGPVLQQLLLPEYYVLVCKAMRTCHLD---------P--GWLQSNVFP----TPSIALRDG-LVALRLDGAIDAPNWHNDGSFYPR--GMRPSVTVEARMD-------VTVGPPWSRGMQGY--AVG--R------------- | |||||||||||||
3 | 4ic6A | 0.11 | 0.08 | 0.74 | 0.56 | CEthreader | --------------------------------------------------------------------------------------PTVFPAGPLFPTEGRIVQLFEKNTYSVVNIFDVTLRPGNGSGVVWDGQGYIVTNYHVIGNALSRNPSPGDVVGRVNILASDGVQKNFEGKLVGADRAKLLKPIKVGQSNSLKVGQQCLAIGTVGVISGLNRDIFSQTGVT-------IGGGIQTDAAINPGNAGGINTAIFTQTGTSAGVGFAIPSSTV-LKIVPQLIQFSKNIELAPDPVANQLNVRNGALVLQVPGKSLAEKAGLHPTSRGFAGNIVLGDIIVAVDDKPVKNKAELMKIL | |||||||||||||
4 | 2owoA | 0.06 | 0.05 | 0.74 | 0.57 | EigenThreader | LDNVFD----EESFLAFNKRVQDRLKN-----NEKVTWCCELKLD----GLAVS-ILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPA-----------RLEVRGEVFL------PGVLEGGEPTLGFVIKVNSGFVARAPRWFVRD---VEFQVG-------------------------RTGHVAGVLVNATLGDKVIRRAGDV-------------------IPQVVNVVLSERPEDTRVERVEGEAVARCT-----GGLICGAQRKESLKHFVSRRAMDVDGMGVVNALEKAKETTFARFLYALGI-----------REVGEATAAGLAAYFGTLEALEAASI | |||||||||||||
5 | 3cwcB | 0.15 | 0.10 | 0.71 | 0.36 | HHpred | --SLSALEVATAIEQ-GFREIWPDADYLKLGTVEAVEAAGRIVHVEVTGPRVNAFYGLSGD----ARSAFIE--AAASPPAQRDPLK-----TTSWGTGELIRHALDAEHIIIGIGGSANDGGAGNDIAQGIGLETLASIDISDKRLSACHIEVACDVTNPASAVF-GPQKGDVLDLAGGGAAGLYAFCGARVTDALHLEAC--LADADLVITGEGRIDSHGKVAKRYNKP-----VIGIAGSLT-------------AHGLDAVFSVIYICT-LEDALKNASERTARNV-------------------------------------------------------------------- | |||||||||||||
6 | 1lcyA | 0.10 | 0.03 | 0.27 | 0.48 | MRFsearch | --AIPSDRLREFLHRR-------YIGVMMLTLSFPDVQHGVLIHK-----------VILGSPAHRAGLRPGDVILAIGEQMV-------------QNAEDVYEAVRTQSQLAVQIRRG------RETLTLYVTPEV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 3jtzA | 0.24 | 0.05 | 0.20 | 0.37 | FFAS-3D | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTDAKIRTLKPSDKPFK--VSDSHGLYLKPGGSRHWYLKY--------RISGKELGAYPAISLSDARQQREGIRKMLALN---- | |||||||||||||
8 | 4wa0A | 0.15 | 0.12 | 0.80 | 0.78 | SPARKS-K | ---------------TSVPSSPLDYAIFSKG--ALNTNKNLTVENG---------SVYSGDLTIDGGAVFIDNLISKGEVINQDSDSR-----------------CRDNNIVVRNIIYVEKSLRSTNIDAKTIYEQLYGAGSYKFVQLFSDSNVKLAGPGSTLASIRGTLEVIDGATVTLKSNSA------VYCNSLVVGSRLILNGAKLYLSIQGTISYPSPPALTTPLPADGSNQLGSTADTSQTPP--------------QIVIYGINDNEARIEISARLIVDFSTLQLHLISRGNITFVGGGLTINGSIISLGSTFNINATGNTLKYQPS------PPIQQDIESNTGIQPSQ- | |||||||||||||
9 | 3icrA | 0.13 | 0.10 | 0.79 | 0.83 | CNFpred | --VPDTDRIKAYIDEKKP------RHATVIGGGFIGVEMVENLRE------RGIEVTLVEMAN--QVMPPIDYEM-----------------------AAYVHEHMKNHDVELVFED---------GVDALEEN--GAVVRLKSG-SVIQTDMLILAI---GVQPESSLAKGA--GLALGVR---GTIKVNEKFQTS--DPHIYAIGDAIEVKDFVTETETMIPLA---WPANRQGRMLADIIHGHTDS-LYKGTLG--TSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKD--SGKIY---GAQTLGR----DGVDKRMDVIATAIKANLTVL | |||||||||||||
10 | 1lf9A | 0.04 | 0.03 | 0.62 | 0.67 | DEthreader | -----------------------------------AQKGVGTANNYVS----KVWFTLA-GAISEVYYPT-IDTAD-VKEIKFIVVPDETKDAISK---VE-KFTDKSLGYDFIVLSFGDSEAKTALTYLKNYIDEWKYMKASEYIASL--------------PWGD-G-----------------SRD-------LYH-VANAFIAAGVANSYLVIPQNPTGIQLGPKTGQERWE---------------------------------A-VAGTADNWQKLIDTYIRIAINIAN------------GGGVYIVDVTIKYNHDG--P-GKGRLWPLLTGERGMYILASNIEHKVLDMP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |