>PF01757 (333 residues) NYDLLRVVAMCLVIGVHVINNYMPVKMTLTGSAEVTRSVLFALFMVCNPLFIMVSGRFNL TFDAAQGAGRTRPNGLAPYVRYYYKRFISLIVPYLLYAGGMGFVAYLVIDHRSVGGAVSG TLFDLFSGYDDSVYWFVFMLAGFVLATPFLAAMMRTIGRSGAWLLVGLAAAVAAAEHICD LVGYPLTFLQSFPWRGLLIYYLLGFVLEYYPPSARIRRGVYALAPFALAWTVATPYLFAG QQMQVGRTVTVAFAMVVMATFLFFRYDVHITSARVRKAIIWLAGYSYTIYLVHSPLSKVL IGPRIPVPTDGWSYAGISVLMFGATLLAALVFA |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NYDLLRVVAMCLVIGVHVINNYMPVKMTLTGSAEVTRSVLFALFMVCNPLFIMVSGRFNLTFDAAQGAGRTRPNGLAPYVRYYYKRFISLIVPYLLYAGGMGFVAYLVIDHRSVGGAVSGTLFDLFSGYDDSVYWFVFMLAGFVLATPFLAAMMRTIGRSGAWLLVGLAAAVAAAEHICDLVGYPLTFLQSFPWRGLLIYYLLGFVLEYYPPSARIRRGVYALAPFALAWTVATPYLFAGQQMQVGRTVTVAFAMVVMATFLFFRYDVHITSARVRKAIIWLAGYSYTIYLVHSPLSKVLIGPRIPVPTDGWSYAGISVLMFGATLLAALVFA | |||||||||||||||||||
1 | 6snhX | 0.11 | 0.11 | 0.93 | 1.03 | FFAS-3D | ---IIFVCAVILRCTIGLGPYSGKGSPPLYGDFEAQRHWMEITQHLPLPLTAFHSYLLFNPSWFALEKSRGFESPDNGLKTYM--RSTVIISDILFYFPAVIYFTKWLGRYRNQSPIGQSIAASAILFQPSLMLHFYNSVMLGLTAYAINNLLDEYYAMAAVCFVLSICFKQMALYYAP-----------------IFFAYLLSRSLLFPKFNIARLTVIAFATLATFAIIFAVTNVFVKYKERFTIQQLQLYSLIATVIGFLPAMIMTLLHPKKHLLPYVLIACSMSFFLFHILIPLLPITLLYSSTDWNVLSLVSWINNVALFTLWPLLKK | |||||||||||||
2 | 5aymA | 0.10 | 0.10 | 0.99 | 1.06 | SPARKS-K | LLTRSGDQAWDFVVPFALLVIFQVAAFYYLIVKIGTFLLTPSSGKWIVWLQFFAILAGMVFFGMLDGLVRAGGRESWLLSVLFIALALSGVMASLGSQITDISVGNDLAPSLVAPEKLTHFNSWLRRFPLAGLFLIGLWNLVSFVPEYFLLRNVIQRSGLKFWLILSYALLWLLAAYLKDEMRLPETEIGLFRGLGAVFGLISTVSFPYLVRRLGLISSSRWHLGFQGVTLGIAVTAFAMGSTASVYVFLGCILLSRVGLYGFSNGEFELRQRLIPE--GRRGELNSLSSLTTTSATLILFSAGLPQTEDFKYLVYVSLAAVLLANVVFIKWS | |||||||||||||
3 | 3rkoB | 0.09 | 0.08 | 0.96 | 1.68 | CNFpred | VLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEG---------VGLCSYLLIGAAAMKAFVVTRVGDVFLAFALFILYNE-LGTLNFREMVELAPAH-MLMWATLMLLGGAVGKSAQQTWLADAMPTPVSALIHAATMVTAGVYLIARTHGLFPEVLHLVGIVGAVTLLLAGFAALVQ---TDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHKSIPLVYLCFLVGGAAVTAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHG | |||||||||||||
4 | 1f88A | 0.09 | 0.07 | 0.75 | 0.70 | DisCoVER | ---M--NGT-----------------------------------EGPNFY-VPFSNVRSP---F--EAPQYYLAEPWQFSMLA----AYMFLLIMLGFPINFLTLYVTVQHKKLRT-PL-NYILLNL--AVADLFMVFGGFTTTLYTSLHGY-FVGPGCNLEGFFATLGGEIALWSLVVLAIEREHAIGVTWVMALACAIPEGMQCSCGIDYYTPNESFVIYMFVHFIIPLIVIFFCYLVTRMVIIMVIAFLICWLPYAGVAFYIFQG-S--------DF-GPIFAKT-SAVYNPVIYIQFCMTTVSKTETSQVA------------------ | |||||||||||||
5 | 6z16A | 0.09 | 0.06 | 0.68 | 0.67 | DEthreader | ----------------------------------------------------------V---------SLRI-----SFDAYV-DGLSLLFALLITGIGSLVV-LY-----Y-YLQ---L--FYVYLLL----FM-GAMLGVVLSDHLIYFVALAIALFIPALVLILFGAFTKAPFYIWLPDAMEAVSYLHSATMVKAGIYVIARLTPIFAVSSVWVWTVALVGLVTLCWASFLASKQTDLKLAYSTVSQLGLITSLLGIGGLSFHYDG-GENVFM-VAV-LA--IF-LFN-AT---S----PITFTLILLPPFNVFIGFVPNVLSDSVL--- | |||||||||||||
6 | 4q65A | 0.05 | 0.05 | 1.00 | 0.62 | CEthreader | KVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNWGWLLVLLVATPALITILFWKEWSVYALIVATIIGLGVLAKIYENQKQRELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNTVPTAMFQSINAFAVMLCGVFLAWVVNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGLPLMVLGLAVMGFAELFIDPVAMSQITRIEVTGVLTGIYMLLSGAIANYLAGVIADQTSSINAYIEVFDQITWGALACVGVVLMIWLYQA- | |||||||||||||
7 | 2fji1 | 0.07 | 0.06 | 0.89 | 0.80 | EigenThreader | SHMTLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERTCFQMFTQQVEVAAGTISEEIKKQINYNHKYDIDPESITPEGGLVEYLIAVSNDQMK-------AADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDKPYQEIGSQAQQIADTLDEYLLDIKPQM---NSVLFVNFIDNVIGETIIKFLTALSFEHSFKNNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMDLSCE------PIDSILDIWQKYLEIDLLVGILKC----------RKDVS------------SSERKKIVQQAT | |||||||||||||
8 | 4aw6A | 0.11 | 0.09 | 0.81 | 0.21 | HHpred | ---FWSGLYTEGTLILLFGGIYLWRL-SGRPEYEITQS----L--VFLLLATLFSALWSLYFVIEEKHG----FNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYII-KIGG--DYFF------------IYAWLFTLVVVLVTIYADYAPLFDKFTPGKLKEEI-----EVMAKS-IDFSSHSNAYFYGKRCKNEEVLAVLGHELGHWKLGHTVKNI-IISQMNSFLCFFLFAVLIGRFGFYDQPTLILIFQFSPYNVLSCLTV-LS--RRFEFQADAFAKKLGKA-----KDLYSALIKLGFPVSDWLFSMW------------------ | |||||||||||||
9 | 1fftA | 0.10 | 0.10 | 0.97 | 0.60 | MRFsearch | --NLSFWFTVVGVILVNVSLGVPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRA-----PGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGNMMMYINLIWAWG----HPEVYILILPVFGVFSEIAATFSRKFGYTSLVWATVCITVLSFIVWLHHFFTAGANVNAFFGITTMIIAKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLANVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSDPQFHTMLMIAASGAVLIALGILCLVIQM | |||||||||||||
10 | 6nf6A | 0.07 | 0.07 | 0.97 | 1.02 | FFAS-3D | ---LFSGLLALNVVFLGSAFISSMIFNHVAITLADVWILLSILKRGSLLLFILLNVFQIGYSVIQINCKSKVEIVFPSIEILFVHNLTRCGLMLTIATNLLLWLLAVTND-------SIHMEIESQLRTTTCKVLLYPFNTEYCLICSVLYVMWKNVGRGPLLGAAAVIIGICVFMMYQIQATGSAPSYYIVLLPLMCVVAIIGTIIHTLEKPTRSLDVVLLMGAALGQIAMSYFSIVADMLNSLILSYSVLLIFQYITQNIFIIDGLQWKRKALKEISFFLVLCNIILWIMPTFGAHPLQKSFYGYSTWFAIVNFGLPLSVFYRMHSVGGLL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |