>PF01690 (485 residues) SEPSPSPQPTPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQN YTKFSSEYYSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSN ADSDYWNVGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTD GRFFLVGPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGH TYMASPHEPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGPTESLRLEFGV NSDSTYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVTDFSSKADLLENWDAEHFDPGYSK EDVAAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPSLKAVSPAIAKLRSIRKSQPLE GGTLNKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENFKKTNPPAATQ WLFEY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SEPSPSPQPTPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTKFSSEYYSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGMIAYSNADSDYWNVGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLVGPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMASPHEPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNSGGPTESLRLEFGVNSDSTYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVTDFSSKADLLENWDAEHFDPGYSKEDVAAATIIAHGSIQDGRSMLEKREENVKNKTSSWKPPSLKAVSPAIAKLRSIRKSQPLEGGTLNKDATDGVSSIGSGSLTGGTLKRKATIEERLLQTLTTEQRLWYENFKKTNPPAATQWLFEY | |||||||||||||||||||
1 | 2ztnA | 0.06 | 0.04 | 0.67 | 0.80 | DisCoVER | -------------------AILRRQYNLSTSPLTSSV---A-------------SGT-------------NLVLYAAPLNPLTASNYAQYRVVRATIRYRPLV-------PNAVGGYAIS---ISFWPQ-TTT--------TPTSVDM-ITSTDV---RILVQPGIALVILHGWRSVETAEEATSGLVMLCI---HGSPVNSPYTGALGLLDFALELEFRNLTPGN--T--------------------------------------------------------------------NTRVSRYTHRLRRGADGTAELTTTAATRFMKD-NGVGEVGRGIALT-LF-NLADTLLSAGG----QLFYSRPVVSATVKLYTSVENAQ-LGDSRVFSVLRANDVLWLSLTAAEYDQTTNPMYVSDTVFVNAWKTFYVLPLRLSFWESDQILIENAHRVAISTYTTGAGPT-SIS--AV--G--VLAP- | |||||||||||||
2 | 4kx7A | 0.05 | 0.03 | 0.59 | 0.50 | DEthreader | ------------------FR-------------LREKKQE-----------------------------NGSLVG----------------------ATDHDACFDEPNKSYLVCTVFYFEYFAM-------------------ENWGLITYTNLQVATVAHELVHQGNTNEGFSFDQMLLEDVP-------------IVTVTTPD---T----VFDGIS-K-------------YLKYQFK-----------VVMWTQMG-NSQPPSDLGYTKEGNYEVATWDSIATLFRSLIDAFAARALLVALTLENFLPWQRVSATYLSS---LPVNLRLLYR-M-GNEI--N-----------EQYQKTSLAQEKEKLYGLASVKNVTLLSRYLD---------SYGKNMAWNWIQLNWDYLVN------------V-----AEPFNTEQLWQMESFFAYPQAGAGEKPR-QV-------ETVKNNIEW- | |||||||||||||
3 | 1vt4I3 | 0.08 | 0.08 | 0.99 | 0.57 | CEthreader | DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 1w8xB | 0.08 | 0.05 | 0.56 | 0.80 | EigenThreader | VQQLTPAQQAALRNQQSYPVIQQVETQTFD--------------PANRS---------------------------VFDVTPANVGIVKGFLVKVTAAITN-NHATEA------VALTDFGPANLVIYYDPDNQRHTETSGWHVMNVIDAPATIA-----AGATGELTMYYWVPLALTGAVLALKLEAFAAVGANPEAIYQGAGAADCEFEEISYTVYQSYLDQLPLPLIDLSLTPNVDFVVQYANLY-----------------------------------------RYLSTIAVFGSFNAGTDNF------------------------------------------SDTRKLDPKTWAAQTRRRIATDFPKGVYN--------RDKPIYTLQYGNPKTVNQNTELVNAGTISTT------------------------------------------------------------------- | |||||||||||||
5 | 1yi7A | 0.12 | 0.10 | 0.79 | 0.34 | HHpred | -----LRGFNPDPSICRDTDYYIATSTPGVQIHH--SKD--------LVNWHLVAHPLNRTSLLDKGNPNSGGIWA-PDLSY--HDGKFWLIYTDVKNYLTTSVDGVNGSGFDASLFHDN-DGKKYLVNYFYGIVLQEYSDKEKKLIGKAKIIYKGT---DIKYTEGPHIYH------IGDYYYLFTAEGG--TTYEHSETVGPYEIDPLKCGHASLVHTHTDEWYLLVGRPLPYCPLGREIQRIEWV-DNWPRVVGGK-QGS-VN-----VEAPKIPEVKTYDEKDNFDD-KLNINFLRIPLT--ENIASLKGNLRLYGK------------ESLTSTFTQAFIARRWQSSSFSPDT-FQQAAGLTCYYNSVTWNDGRVIDIVC--CDNFHFDLKS-NVIPIPVEYIHLKVEVRVETYDGINWSKFESRKLSDDYGGFFTG------------------------------------------- | |||||||||||||
6 | 3l81A1 | 0.11 | 0.02 | 0.20 | 0.37 | MRFsearch | ------------------------------------------------FRLFPSVQWDSGRLQVYLKLRCDKSQALNVRLHLPLPRGVVSLSQELS----------------SPEQKAELAGALRWDLPRV--------------------------------QGGSQLSGLFQMDVPG---------------------------PPGLGLGPASLSFE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 4fhmB | 0.10 | 0.09 | 0.91 | 0.51 | FFAS-3D | --PALENDSL------FKKECVAYDAGVYTSNKSKGQNRTLTIFDVSLNS----KKEPLSKFNVKIHFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQL-----------------PDARLDDDW----CLCYRPISFLNQKPDAISTSEICVS---FFNGGLTKIILNSHYEQHIDDSKKYTIISMIFLSTYNVLVMLS----LDYKLKLNQCVETIELSQTILPLQSFPYLTHTTNSFIALYYPDNSHGSFSIYKLNANAHSFKLNVVIEKGIIPPSLPDDEFIPWMLSDFQLISSEGSQSKFSLDQDESFSCVWSHSLDSFSLIEKTFFDVPTNMSSG-DISEIWLQHIFAHNTSIESIQVALLSFQNSSSQTISELKNAVLSSIVSTIQIEPNSDLTGYRFAKLVAYLDHFGDEILSINFDPSNAVTYINYANKV--AFIRDPYLIESFDEEPLTKLISDLGRSLHSCMSFSTLSEIRY- | |||||||||||||
8 | 1zvoC | 0.07 | 0.06 | 0.86 | 0.88 | SPARKS-K | ---------RLQLQESGPGL--VKPSET-LSLTCIVSGGPIRRTGYYW--GWIRQPPGKGLEWIGGTISVDTSRNQFSLNLRSMSAAMYYCARGNPPPYYDIGTGSDDGIDVWGTVHVSSAPTKAPDVSGCRHCLITGYHPTSVTVTWYQPQRTFPEIQRRDSYYMTS---SQLSTPLQQ----------WRQGEYKCVVQHTASKSKKEIFRW------PESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKGSDLKDAHLTWEVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVHPSLPPQRLMALREAPVKLSLNLLASSDPPEAASWSGFSPPNIREVNTSFAPARPPPQPGSTTRVPAPPSPQPATTLLNASRSLEVSYVTDHGPM------------------------------------ | |||||||||||||
9 | 2yfnA | 0.12 | 0.04 | 0.32 | 1.08 | CNFpred | --------------------------------------------------EIVLADE-NAQVEVHLLYGVLENDVITRSVRIKNT-GTGQITIEKAAAACLDFV----QGEFDVLRFYGK--AMERNLERT-TIAFGSRRG-TSSHQYNPAVILAEKGTTAGSCYGML-NFSCEAEKDQFNQTRLLLGLNE--ELFSYPLASG----ETFTVPEVILSYSAE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 6qtiA | 0.05 | 0.03 | 0.60 | 0.67 | DEthreader | ------------VKPGIPYK-L-VGVPKEIFQN---------EKRVALSPGVQALVKQGFNVVVEAAPMLNPT-GIHEADLLKTSG--T-LISFI--------------------YPAQNPD--LLNKLSKRNTTVLADQVPRLSAGIVGGAGSDILISTAPILDLAAE--------------------AG-----TKPGELYVHIGYTDLPSASYILLISYFEVK--FDTMGHV-------------------------------------------------------------------------PVKQKTAEAEAAIPRKMTSVAGGGLKIVAYLGT---------LPG----------------LGSVSALSAVMGVLNSYSGWLVGALIGS---SGAILSYIMCVRSLANVILGG----------GRMPGQLNVLLAEAVYIVLEMEINHDFPDTDL------SA-QEDGPVLEVWKSV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |