>PF01577 (240 residues) NDPEDAFRLTRNGMSKVKKGPNGRIILRKPKARHVFERINLEKSEKEQKGKFFNGEYDTT VTSIKGVTTSKENDLGAFSLRSPFYKRTCKKEKRRITRENIVCVDDVNNLCERILKITRD KNIPVEIIGKRRNHHTLTFKKFKGSFVGKVSLAPERSQMKHVEMSYGQFDYILQAICRIT STKHVRDEDIKPGCSGWVFSTDHALTQKYSRLPYLVIRGRDDDGIVNALEPVLFYSDVEH |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | NDPEDAFRLTRNGMSKVKKGPNGRIILRKPKARHVFERINLEKSEKEQKGKFFNGEYDTTVTSIKGVTTSKENDLGAFSLRSPFYKRTCKKEKRRITRENIVCVDDVNNLCERILKITRDKNIPVEIIGKRRNHHTLTFKKFKGSFVGKVSLAPERSQMKHVEMSYGQFDYILQAICRITSTKHVRDEDIKPGCSGWVFSTDHALTQKYSRLPYLVIRGRDDDGIVNALEPVLFYSDVEH | |||||||||||||||||||
1 | 6gc1A1 | 0.10 | 0.05 | 0.53 | 0.67 | DisCoVER | --------DLSVPEFP----EGLEWLNTPI---SVYK------------------DLCGKIVVLDFFTNCLLLGLLIIGVHSAEKVLNIKSAVYNITHPMVNDADASLWQE--------------------------LEVSCWPTLVILGPRG---------------------NML-FSLIGEG-----KDKLFLYT---------------------------SIALYYQIRDNKIG- | |||||||||||||
2 | 5e9aA | 0.06 | 0.05 | 0.71 | 0.67 | DEthreader | ESWSARPAWMSQKYVLHGG----RHNHCMSSPVYEKVQLMNGQLAKRYAHH-PAVIGWHINEYGGECHNTVFC--EI--LKAPA--------------------YFNDYDYWKLAGVL---DFISWDSYPM---HDMRTLK----QGKPFVLSG-HILSSLQA---HYENVAVDVINADCDLQGYDL----------VIAP-----GGRFVATY----A-LGVTAARRTFIFL------- | |||||||||||||
3 | 5h3xA | 0.06 | 0.03 | 0.58 | 0.59 | CEthreader | -----------------------------------------------------------------------------------------------------SFDGFFLHHMTAELRANLEGGRIQKINQPFEQEIVLNIRSNRQSHKLLLSAHSVFGRVQLTQSDFTNPKTFTMILRKYLQGAIIEEIRQLDNDRILEFSVSNKDEIGDHIQATLIVEIMGKHSNIILVDKSEQKIIEAI | |||||||||||||
4 | 4fkcA | 0.09 | 0.08 | 0.93 | 0.58 | EigenThreader | RIHKFQAHFGKKGFEGALVAERLFVLILPSNPYKIFATKIKETF------------KEGEKLLIDDTMPVGVFLKAKDIFDKYIKDKDEIKAHKKRFIEGKLEGKSERELANRIEYMIKNSFEPIVASGRKGDVVIFDYGKYLGYCSDVTRTGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATAYGEYFTGHGLGIDPGNKKILKDGMVFTIE-----PIEDDVALVDKGIRLT | |||||||||||||
5 | 6cf7A | 0.12 | 0.09 | 0.75 | 0.30 | HHpred | ----PECELLIESWSYIVEKPNGTCY---PGHFAD--Y--------EELREQLSSVSSFERFEIFPKE-SSWPN---HTTTG-----VSASCSHN------GE----SSFYK-----------NLLLTGKGLYPNSKSYANNKEKEVLVLWGVHHPPNYHKENVVSSHSRKFTPEIAKREGRINYYWTLLEPGDTIIFEANGN-LIAPRY---AFALSRGFGSGIINAP--MD------- | |||||||||||||
6 | 3j60H | 0.17 | 0.10 | 0.62 | 0.55 | MRFsearch | --QELKSDLKDLYINTAIQMDNRKAVVIHVPYRLRKPFRKIHVRLVRELEKKFSG-KDVVFVATRRI------------------VRPPKKGSAVQRPRTRTLTAVHDGILEDVV-------YPAEIVGK------RVRYRLDGAKVIKIYLDP--KERNNTEYKLETFSAVYRRLCGK--------------DVVFEYP---------------------------------------- | |||||||||||||
7 | 3zey4 | 0.16 | 0.10 | 0.60 | 0.49 | FFAS-3D | SHKTLRAQLPRFHINTVRTRHKKTAMIILYPLRFIMLVRKIQRTLTAELEKRFPGN----IVVLVA--------------QRKITKRPNDVYKLQQVQRSRTSVAVFENILNDLI-------YPCDVVGRR------WRYRTDGSKLMKVFLDARD--RKRVESRLPLLAHVYKLLT--------------------------------------------------------------- | |||||||||||||
8 | 5fjmA | 0.08 | 0.07 | 0.86 | 0.65 | SPARKS-K | HYGKILWRGMNEKIGAYRTQ--GRVEALADE-----KALDRAQEWIKTAKETAGFDVPLNTRIIKGEELSNRLVGAQTPWTVAAFEE-------------DSGSVDPETGTPTLARYAKQIGVKIYT------HCAVRGIETAGGKISDVVTE--KGAIRTSNVVLAG-GIWSRLFMGNMGVDL----PTLNVYLSQQRVSGVPGAPRGNHLPNGIHFREQADGTYAVAPRIFTSSIVKD | |||||||||||||
9 | 2q9uA | 0.07 | 0.04 | 0.57 | 0.62 | CNFpred | AQMRKALEVASTVIKYILSAH--GVSWRGDAMGLAIAEY----------DRWSKGQHCQKKVTVVLDS-----------------------------------YGTTHRMALALLDGARSTGCETVLLEMTSDITKVALHTY-DSGAVAFASPTL-------NTMMPSVAAALNYVRGLT---------LIKGKPAFAFGAF-------------------------------------- | |||||||||||||
10 | 5d06A | 0.09 | 0.06 | 0.73 | 0.67 | DEthreader | -KIDEEY-CAYNPDDHSVK----IPK--------------NMREEI--GW-LTFKAAFSLERTDAIPTKLRESIVIFETQQLGIDLFLVIMCCRLAMMSNV------------V---IL-QNIAAMAA--WGRDVFHILA-----FAKTLIPNLLDNPRYNARDAAWFFVQAIQYVVSLLQEKVTRRFPLEYIPY--SSTIEE-I--------IYEIL-------NRHAGGIKYREANAL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |