>PF01518 (366 residues) MDNTVRVGVSRNTSGAAGQTVFRNFYLLRCNISADGRNATKAVQSHFPFLSRAVRCLSPL AAHCADRTIRRDNVKQLLTRELPFPSDLISYAHHVNSSSLTTSQGIEAARLVAQVYGEQL SFDHIYPSGSATYCPGAIANAISRIMAGFVPREGDDFTPSGAIDYLAADLVAYKFVLPYM LDVVDGRPQIVLPSHTVEEMLTNTGLLNSIDASFGIESRSDQRMTRDAAEMSSRSLNELE DHEQRGRMPWKIMLAMLAAQLKVELDALADERTESQANAHVTSFGSRLFNQMSAFVPIDR ELMELALLIKEQGFAMNPGQVASKWSLIRRSGPTRPLSGARLEIRNGNWMIREGDQTLLS VSPARM |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDNTVRVGVSRNTSGAAGQTVFRNFYLLRCNISADGRNATKAVQSHFPFLSRAVRCLSPLAAHCADRTIRRDNVKQLLTRELPFPSDLISYAHHVNSSSLTTSQGIEAARLVAQVYGEQLSFDHIYPSGSATYCPGAIANAISRIMAGFVPREGDDFTPSGAIDYLAADLVAYKFVLPYMLDVVDGRPQIVLPSHTVEEMLTNTGLLNSIDASFGIESRSDQRMTRDAAEMSSRSLNELEDHEQRGRMPWKIMLAMLAAQLKVELDALADERTESQANAHVTSFGSRLFNQMSAFVPIDRELMELALLIKEQGFAMNPGQVASKWSLIRRSGPTRPLSGARLEIRNGNWMIREGDQTLLSVSPARM | |||||||||||||||||||
1 | 6pk1A | 0.05 | 0.03 | 0.71 | 0.74 | DisCoVER | ----------YGPGRHHLFVPGPVVLLVKIFKTT-------------------------SGTPFLFPTTGGAESALTNLSPGDRIV-SF--L-------IGQ--FSLLW--IDQQKRLNFNVDVVESANLQVLNHTIKAICI-V--HNETA-----T--------GVTNDIALLLVDGVICRMDGVDVALTGS-QKAL-SL----PT-GLGIVCASPKALEATTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALIIRHARLGKATRLAVEAWGLKN--CTQKEEW-----------IS------NTVTAV-MVPPHI------------DGSIVWYNLSLGLGAGKVFRIGHLGNV- | |||||||||||||
2 | 1kv9A | 0.07 | 0.04 | 0.65 | 0.67 | DEthreader | EYAEQRASWSRPEVAKVKARTSCCDAVNRGVALWGDKVYLIASQQTTDY----G--------------APRVVGKIAYAWRFYTVGGGNGSWRRSPGGG----DNLYLSS--ILAIRPDTG---------------WDFTATQAPKNGFFYLSAEKKVRPVEAVRMWPSPFG-AHNW-H-SMSFNPLVYIPY-----------------GALLAWKVVFQAYSAKGEALWQ----------------------WGGVATLT------------------------------GG--ESMNLPM-----V-PQVQAGKLYFCSHGTISGGIPDLRQSSDTREFIALKPGMPSFDKPEEVE-------- | |||||||||||||
3 | 1vt4I3 | 0.06 | 0.06 | 0.98 | 0.66 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 3pyaA | 0.05 | 0.04 | 0.86 | 0.72 | EigenThreader | IPTTLLHSLEGMRDLDWEKLLKLQSQ--DGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRF----NGGVPNV-------FPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHEFFCFVGQSNQAVTGMFNLYRASQFYIDQYVWIGK----TLYRMPYVNNQKWYEENRLSEWGVCYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGEGELMVKMIILMKHFVRLAEIINRICKEKTIKSMEKEMGKMVELALSESDTFRDVSITFLDVAKAFYYFALCGDTHISKVLFQKVG--------------------------------- | |||||||||||||
5 | 5fmmA | 0.16 | 0.11 | 0.70 | 0.38 | HHpred | ---------------KKEEEVLTNLQTLKIRVHEATRRLIQ-LIVSGRDQQS--------------------------------IAEAI----------------IVAMVFSDCMIKAVLNFVNRA---NQRLNPMHLLRHFVMGMIGILPD-MTPSTE----MS----------LRGVRVS--KMGV--DEYSVSIDRFLRVRDQRGNVLLSP-EEVSETQGTEKLTITYS--SSMMWEINGPNTYQWIIRNWETVKIQWSQDPTMLYNK-MEFEPFGQYSGFVRTLFQQMGTFDTV--QIIKLL------PFAAAPPKQS-----------RMQFSSLTVNVRSGMRILVRGNSPVFNYNKA-- | |||||||||||||
6 | 6bq1A | 0.13 | 0.08 | 0.65 | 0.68 | MRFsearch | --------------------------------------EVPFMREMAGAWHMTVEQKDPLAASEASPCPPEVTPHYIW---IDFLVQRFEIAK---------YCSSDQVEIFSSLLQRSMSLNIGGAKGSMNRHVAAIGPRFKLLTLGLSLLH-------NATIRNVLREKIYSTAFDYFS------CPPKFPTQGEKRLREDISIMIKF-------------------------WTAMFSDKKRGSQLHKYYMTLLLSLLATEIERLIWKDNVNLAWSISPYLAVQLPARFKNTEAIGNEVTRLVRLDPGAV--SDVPEAIKFLVTWH------------------------------------- | |||||||||||||
7 | 6m3pA | 0.09 | 0.07 | 0.77 | 0.62 | FFAS-3D | -AAEAEAWMSEQMSEDEQSA----------------VSMLKKHQILEQAVEDYAETVHQLSKTSRALVADSHPESERISM---RQSKVDKLYAGLKDLAEERRGKLDERHRLFQLNREVDDL------------EQWIAEREVVAG------SHELGQDYEHVTMLQERFREFARDTG------------NIGQERVDTVNNMADELI-------NSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELIFGRIQDKHKKLPEENTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAADKADDIQKRENEVLEAWKSLLDACEGRRVR---------------------------- | |||||||||||||
8 | 6tc0C | 0.11 | 0.10 | 0.92 | 0.55 | SPARKS-K | ASGTLATLYPGAFSRHLLPKLAEELHKGESTKCSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQAN--KGNMVTESSEVVAVCQSLQQVAEKCQQDPESYWYFHKAVPCLFALAVQASM------PLLEDEVLAALASVIGTATTHLS---------------PELAAQSVTCIVPLFLDGNTSFLPFQPFQDGSSGQRRLVALLTAFVCSLP-----RNVEIPQLNRLMRELLKQSCGHSCPFTAATKCFAGLLNKQLEEFLQLAVGTEAGLARDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSDP--ELGCAAADGFSLLMSDCTDVLTRAGHADVRIMFRQRFFTDNVPALVQGFHA | |||||||||||||
9 | 4fgvA | 0.10 | 0.07 | 0.64 | 0.87 | CNFpred | ------------------------------------NEIVSACHSSLSVCENNMIILRLLSEEVFDYSATSTKTRNLKSTMCAEFSMIFQLCQESATQPSLIKATLETLLRFCNWIPLGYIFET------------PLIDTLRTRFLEV-------------PEFRNVTLQCLTEIGGLQTGGPGQPHTY---DEQLIKMFTEV--LTTISNII---------------PLQMDLKATYPNSNSRDQEFIQNLALFLTSFFTMHLPLIENLPN----RDFLTHGHFYLIRISQI---DDREIFKICLDYW-------LKLVQELYEEMQSL----------------------------------- | |||||||||||||
10 | 6g7eB | 0.06 | 0.04 | 0.79 | 0.83 | DEthreader | -HK------NFFRL----ESLDVATIVGLLFDQETRHGAAGLRILAYLLLGLVGVGGDVSVSAATLIPAKEVLSFPLKATFANL-QLNGRILRLIF-QNIIVERDQDTLNSLELWTT--VRRLAAPLADFEHAEPQLALH----------FKTHDVDGHQGEVVGVDVLIRSRISAAKGLSTPRLASYDVIYAASFI-PLQKIIDLERPHY-DL-TYVRVASSIAENVIEEKAAEA-----------EENQELQSRSAATIARLVQLFT--ES--GRRGPAEKVVANLVFITRRGAKEALELSLLVTLRTFEE-----------T--LHPALHPFV-VV----------AAKCAGEV--------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |