>PF01516 (324 residues) LLAPGDVIKRSSEELKQRQIQINLIDWIESESGKEDKAEPKEESKAEESKDGQGTQSESS QKKEGSKEAKDADVDRRIHTAVGSGSSAKGPGVRANENVDRGDGKVGGGGGNADAGVGTI GANGGRWVVLTEEIARAIESKYGTKIDVYRDKVPAQIIEVERSLQKELGISREGVAEQTE RLRDLRRKEKSGAHAKAAERGRRKQGKKPHGDVQKEGTEEEKTSEEQASVGIAIEGVMSQ KKLLSMIGGVERKMAPIGARESAVMLVSNSIKDVVRATAYFTAPTGDPHWKEVAREASKK KNILAYTSTGGDVKTEFLHLIDHL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LLAPGDVIKRSSEELKQRQIQINLIDWIESESGKEDKAEPKEESKAEESKDGQGTQSESSQKKEGSKEAKDADVDRRIHTAVGSGSSAKGPGVRANENVDRGDGKVGGGGGNADAGVGTIGANGGRWVVLTEEIARAIESKYGTKIDVYRDKVPAQIIEVERSLQKELGISREGVAEQTERLRDLRRKEKSGAHAKAAERGRRKQGKKPHGDVQKEGTEEEKTSEEQASVGIAIEGVMSQKKLLSMIGGVERKMAPIGARESAVMLVSNSIKDVVRATAYFTAPTGDPHWKEVAREASKKKNILAYTSTGGDVKTEFLHLIDHL | |||||||||||||||||||
1 | 3fcrA | 0.05 | 0.03 | 0.72 | 0.58 | DisCoVER | LLDAFALYCVN--VGY-GRIAAIQAYYHSYGTEASITLAILDRAPKNSKVYFGLGGSDANETN----LGRPEKKKIISRWRGY-H-GSGLVTGSL--TGLELFHLPVQVIHTEAPYELELITIAAFIGEPILGT-GGI--VPPPYWIQLDILLVADEVVTGFGR-------------LGTFG--SDH--------------------------------------YGLEPDIITIAGLT------SAY-------APLSGSYS-A-HPIGAAAGVANLGLLCAVSLLEQDK-IIA-RAPQILGFAPP-----FC--LTQVVEG- | |||||||||||||
2 | 6rutB1 | 0.07 | 0.05 | 0.65 | 0.67 | DEthreader | ------------------------------VKESLEVFNPTQRLKSSGVKLEA-KEFTEAWGAKSSPIALPFEAFANGNMV---FIFGGLSIGVFR------AVLFG--GLINPQTGLKDLPLG-----PRMAVSG------AGTLTMGDTTVPLEDLYAP------WIGNGKPFSPTFSN-VG-GAG-YR-------------GIPFEQVDPNKPTTYPLPWNALTFTNKNQLIPVLISGLYGFNTNST---------------------STL-VGGLNWGGWFSSLQ-DQTIIWADQLSPSFQ-----ALK----------- | |||||||||||||
3 | 4c12A | 0.09 | 0.08 | 0.88 | 0.64 | CEthreader | ---------------------------------------MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYQNVADQGCKLVVVNKEQSLPANVTQVVVPDTLRVASILALVTFGVTIATMIHLIQRKLQKNSAYLGAGAESMTLEVSSHGLVLGRLTMEAYGHASLLFSQLGEDLSKEIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIMAAMIAVWSKGTSLETIIKAVENPIDLIIDYAQPFVKQKLIFLVGMAGELTKTPEMGRVACRADYVIFTPDNPANPKMLTAELAKGA | |||||||||||||
4 | 5gl5A | 0.07 | 0.06 | 0.83 | 0.58 | EigenThreader | SRGDVQPYIALGKGLIKEGHQVVIITHEFRDFVESHGIQFEEIAGMLREASSKFRGWIDALLQTSWEVCNRRKFDILIESPSAMVGIHITEALQIPISGQVNKWRVETLGLGKTNLFLLQQNNVPFLYNVSP-----------TIFPPSIDFSEWVRVTGYWISEARSKGKAKEMTEALVEAVMEA--------------DGWSERLGKKTEVDLPRNILNIGNVP-------------HDWLFPQV---------------DAAVHHGGSGTTGASLPTVIKPF-FGDQFFYAGRVEDIGVGIALKKLNAQTLADALKVATTN | |||||||||||||
5 | 6vgaA | 0.21 | 0.06 | 0.27 | 0.31 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DKKLIEEARKMAEK--------------------------------------ANLELITVPGSPEIRLAQEIAEKAPGPVK----VLVLITGS---------------ADPDEKTKAKEEARKWNVRVRTVTSPDWIKEFSEE---- | |||||||||||||
6 | 2pffB | 0.14 | 0.12 | 0.87 | 0.63 | MRFsearch | -------------------VRVIVAGTLGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGQGSQEQAAQDVWNRADNHFKDTYGFSILDPVNLTIHFGGEKGKR--IRENYSAMIFETIVDFKEINEHTLMEKAAFEDLKSKGLIPADATF---------------AGHSLGEYAALASLADVMSIEAVPRDELGRSNYGMIAINPG-----RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEDLRALDTVTNVLNFI | |||||||||||||
7 | 3zf7x1 | 0.10 | 0.04 | 0.39 | 0.48 | FFAS-3D | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDRSSRNELLKLVKKYAPETRKARRDRLTKVAEEKKKNPKGTVSTKAPLC----------------VVSGLQEVTRTI----------EKKTARLVLIANNVLWMPTLCRYAIVKDK----ARLGDAIGRKTATVAFTDVNAEDQAALKNLTRSV | |||||||||||||
8 | 5xwpA1 | 0.12 | 0.10 | 0.86 | 0.68 | SPARKS-K | -------------SKVTKVGGISHKKYTSEGKSESEENRTDERLSALLNRLDYIKNPSSTETKENQKRIGKLKKFFSNKVYLKDNTLSLKNGKKENIDREYSETDVRDKKNFAYLNENVNSE-------ELEVFRNDIKKKLNANYQKINEN-NIEKVEGKRNIIYDYYRESAKRDAYVSNVKEAFDKLKEEDIAKLVLEIENLTKLEKREFYHEIIGRKNDKENFAKIIYEEIQNVNN-KELIEKVPDSELDKEEL------------NDKNIKYAFCHFVEIES-----QLLKNYVYKR-------SNDKIKRIFKKLIENK | |||||||||||||
9 | 3sqwA | 0.10 | 0.06 | 0.58 | 0.60 | CNFpred | IVAPTDLALQIEAEVKK-KYACVSLVGGTDFRAAMNKMNKL----------------------------------------------------------------------------------RPNIVIATPRLIDVLEKYSNKFFRF------VDYKVLDE-ADRLLEI--GFRDDLETISGILNEKNS------------------------------------KSADNIKTLLFSLDDKVQKLANNIMN--------KKECLFLDTVPEAHERIDQSVVISEKANSIFAAVEHIKKQYKAIIFAPTV-KFTSFLCSILKNE | |||||||||||||
10 | 6fb3A | 0.07 | 0.05 | 0.71 | 0.67 | DEthreader | ----------------------------GNGRRKLLAPVAPKYYRGIFVDRKSTLLVITENHQVSI-----MEKSIT------IDIE----------NRDDDV-TVITNASYTVRNSYQLRVM--ISFHS-EP-HVLAGT--VTPTIGRCNISNSIEWRL---KVTVFGYDIRTEK-IYDDHRKF------HDSFRI-ASI--KP-IISETPL-----YFYADLHNQSNIIPFFMALEGQ--VI-SKRLHA--SIREKAHGKGIMFAVRVT-GI--RKIALNAHYLEMHYFVKIGSADSDLTLVEFQYSTLLI----------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |