>PF00242 (353 residues) AEKHLRELENLVDSNLEEEKLKPQLSMGEDVQSPGKGEPLHPNVRAPLSHVVRAATIDLP RLGNKLPAKHHLGKLSGLYQMKGCTFNPEWKVPDISDTHFDLQVVNECPSRNWKYLTPAK FWPKSISYFPVQAGVKAKYPDNVMQHEAIVGKYLNRLYEAGILYKRISKHLVTFKGKPYN WELQYLVKQHQVPDGTTTSKINGRAENRRRRAPAKSISRPHDSERDCNMVGQISNNRSSI RPCANNGGGKHSSTTGRLACWGGKTIGTDQSYSSRDASASVDSRGRSKSSRGFSSISRRK ATGNHHHCSYVTNSVEATTRGRSTPGKQVFTRDSSSLPESRASRACDKDSSPQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AEKHLRELENLVDSNLEEEKLKPQLSMGEDVQSPGKGEPLHPNVRAPLSHVVRAATIDLPRLGNKLPAKHHLGKLSGLYQMKGCTFNPEWKVPDISDTHFDLQVVNECPSRNWKYLTPAKFWPKSISYFPVQAGVKAKYPDNVMQHEAIVGKYLNRLYEAGILYKRISKHLVTFKGKPYNWELQYLVKQHQVPDGTTTSKINGRAENRRRRAPAKSISRPHDSERDCNMVGQISNNRSSIRPCANNGGGKHSSTTGRLACWGGKTIGTDQSYSSRDASASVDSRGRSKSSRGFSSISRRKATGNHHHCSYVTNSVEATTRGRSTPGKQVFTRDSSSLPESRASRACDKDSSPQ | |||||||||||||||||||
1 | 2pffB | 0.08 | 0.07 | 0.92 | 0.70 | DisCoVER | ---VPTASFFIFAADDEPTTPLVGKFLGYVSSLSKVGQFDLTAMQLVAIFGGQGNTIQLAHYVVTAKPGELRSYLKGATPSPMLSISN-LTQEQV--QDYVNKTNSHGK-QVE-ISLAKNLVVSGPPQSLY---G-------------LNLTLRKAKA-KLKFSNRFLPVASPPVYDQFKAT-HILDFGPGGASGLGVRVIVA-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGKGLIPADA-- | |||||||||||||
2 | 4kf7A | 0.08 | 0.05 | 0.65 | 0.67 | DEthreader | DLSSGGSQYY-ASRFPYEFLA------SETGLVKNPSEHSTLALFG------------------------RLEVNLMA---------DTALGY-LSADELIEGISLLATVAETLRSDRGLRLTESDNVDTLDSLVEEE----ADLDGPKTAALSSCLQFLHAA------------------------------DMLAEYD-LLSAVKLSS---------IASVDVFSRSVRDVG--HKMLVPLTAALAVRLVLFATI--------IQTQL---------VIARLAIRHFRIPSLLALVE----------PSLLGYLGVSRSFIQ-----T-RFFSTILRNRQQMANCLLT--- | |||||||||||||
3 | 2zxqA | 0.08 | 0.08 | 1.00 | 0.48 | CEthreader | TLDNVKKVALNTDGLGQSVLLKGYGNEGHDSGGQRLGGADDMNTMMEEGSKYGARFGVHVNASEMYPEAKAFSEDMVRRNSAGGLSYGWNWLDQGVGIDGIYDLASGSRVSRFADLSKEVGDNMDFIYLDVWGNLTSSGSEDSWETRKMSKMINDNGWRMTTEWGSGNEYDSTFQHWASKGENSEVMRFLRNHQKDSWVGDYPQYGGAANAPLLGGYNMKDFEGWQGRVSTKFIQHFKVTRWVNNPLLTADNGNAAAVSDPNTNNGNEQITLKDSNGNVVVVSRGSNDTSSAAYRQRTITFNGVKVASGVVSAGDGSATGDESYLLPWMWDSFTGKLVKDSEQKLYHWNTKGG | |||||||||||||
4 | 5dseA | 0.06 | 0.06 | 0.94 | 0.65 | EigenThreader | SVVYDLLTIALGRRGQYEMLSECLERAMKFAFEEFHLWYQFALSLMAAGKRAVKVLKECIRLKPDDATIPLLAAKLCMGSLHWLEEAEKFAKTVVTSEFKAKGYLALGLTYSLQATDASVLQRKALLAFQRAHSLSPTDHQAAFYLALQLAISALGYVRQALQLQLSEYPEN-------FILLFSKVKLQSLCRGPDEALLTCKHMLQIWKSCYLHP-----------WMTLAQIWLHAAEVYIGIGKPAEATACTQEAA----NLFPMSHNVLYMRGQIAELRGSMDEARRWYEEALAISPTHVKSMQRLALILHQLGRYSLAEKILRDAVQVNSTALEASSPAVPFTIIPR | |||||||||||||
5 | 2pffB | 0.17 | 0.10 | 0.60 | 0.54 | HHpred | -FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-----LSISNLTQEQVQDYVNTNSHLPAGKQVEISLVNGAKNLVVSG----------PPQSLYGLNLTLRKAKAPSGLDQS----RIPKLKRFLP---VASPFHSHLLVPNKDLVKNNVSFNAKDQIPYLRVLSRIVCIIRLPVKWETTTQFKAT----HILDFGPGGAS-----GLGVLT-HRNKDGTG----VRVIVAGTLDINPDDDYGFK-------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 1wyoA | 0.13 | 0.04 | 0.29 | 0.43 | MRFsearch | --DMLAWVNDSLHLN--------------------------------------------------YTKIEQLCFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMG-----------VDKIIPVEKLVKGK-----FQDNFEFIQWFKKFFDANKDYNPLLA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 1izlL | 0.13 | 0.12 | 0.95 | 0.41 | FFAS-3D | --AHLMHTALVASMALYE--------LATFDPSDPVLNPMWRQGMFVLPFM---ARLGVTGSFEGVALAHIVLSLAACWDLELFRDEPALDLPKMFGIHLFLAGLLCFGFGAFHLFGPGMWVSDPQPVAPEWDGFNPYNPGGVVAHHIAAGIVGIILFKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSRTSP-RGWFTFAHAVFALLHGARTLFRD---- | |||||||||||||
8 | 5jcss | 0.08 | 0.07 | 0.94 | 1.13 | SPARKS-K | LSILLSLLEK---RELTIPSRGETVKAANGTVRINEDHQKDYNLNMIGMRIWNVIELEEPSEEDLTHILAQLTNLIPKYKMNTKFISLNKGAHTRVVSVR--DLIKLC-ERLDILFKNN--------------GINKPDQLIQSSVYDSIFSEAADCFAGAIGEFKALEPIISLDIAS-SRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFQQLAKMLAKKLTVINVSQKPKTVAVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIE | |||||||||||||
9 | 5bjsB | 0.13 | 0.03 | 0.21 | 0.41 | CNFpred | -------------------------------------------------------------------HRDNLQDFIDL-------------------RPEEKEFLQEWDAFILRHISSEQYLPRYFLRFVREK------ADWLVSRGEEFSKLVATLLARRVLPERV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 5a22A | 0.07 | 0.05 | 0.72 | 0.67 | DEthreader | RHRELKGRFFSLMSRFVITEYKTTMADVQKTINLLIQR-----AQGDNQV------------------------QSDYLNYG-IPIFRGV-R-----LETKWSRVTCVTQANISSSPANLLKTEVKK-L------------IRNQVIKDATIYLYEEDRLRSLWPS----RELDDLIVRSEVSSLTHL-KLH------------------------ADLRYKSWGRTV--IGTTVHLHHGGFASQSTAALTLAFQATLRPIEEI--ED-SL--SPPFLSSNRDMGVQIFGNINVAITGFLYQQCLAVIQQSFPIRWEAV----TRGDGLPKDT----LTGMIEWRRIS----- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |