Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | PSPDGSPNITSVSHNSVKVKFSGFEASHGPIKAYAVILTTGEAVHPSADVLRYTYEDFKKGTSDTYVTYLITTEEQKRSQGLSEVLKYEINVGNESTTHGYYNGKLEPLGSYRACVAGFTNITFNPHSDGLIDGNESYVSFSRYSDAVFLPQDPGVICGAVFGCIFGALVIVAVGGFIFWRKKR |
1 | 2ibgA1 | 0.18 | 0.11 | 3.53 | 1.11 | FFAS-3D | | TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTND-------------------NIPYGKPKWNSELGKSFTASVTD-----------LKPQHTYRFRILAVYSNNDN--------------KESNTSAKFYLQPG------------------------------- |
2 | 5u8qA3 | 0.11 | 0.07 | 2.54 | 1.06 | Neff-PPAS | | PSIPLDVLSASNSSSQLIVKWNPPSLPNGNLSYYIVRWQRQPQDGYLYRH---------------------NYCSKDKIPIRKYAYPFFESRVDNKE--RTVISNLRPFTLYRIDIHSCNHEAEKLGCSASNFVFARTM--------------------------------------------- |
3 | 3f7pE2 | 0.16 | 0.10 | 3.43 | 0.99 | SPARKS-K | | PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVN------------------------------------DDNRPIGPMKKVLVDNPKNRM-LLIENLRESQPYRYTVKARNGAGWGPER-------EAIINLATQPIPIVDAQSGEDYDSFLM---------------------- |
4 | 5u8qA3 | 0.12 | 0.08 | 2.68 | 1.03 | FFAS-3D | | PSIPLDVLSASNSSSQLIVKWNPPSLPNGNLSYYIVRWQRQPQD-----------GYLYRHNY----------CSKDKIPIRKYAYPFFESRVDNKERTVISN--LRPFTLYRIDIHSCNHEAEKLGCS----ASNFVFART------------------------------------------ |
5 | 2ibgA1 | 0.18 | 0.11 | 3.54 | 0.56 | HHpred | | TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDN-----------------IPYGKP--KWNSELGKSFTASVT-----------DLKPQHTYRFRILAVYSNNDN--------------KESNTSAKFYLQPGAAL---------------------------- |
6 | 5u8qA3 | 0.16 | 0.10 | 3.27 | 0.97 | MUSTER | | PSIPLDVLSASNSSSQLIVKWNPPSLPNGNLSYYIVRWQRQPQDGYLYRHNYC--------------------SKDKIPIRKYAYPFFESRVDNKERTV----SNLRPFTLYRIDIHSCNHEAEKLGCSA----SNFVFARTM----------------------------------------- |
7 | 3eh1A | 0.16 | 0.10 | 3.25 | 0.65 | CNFpred | | --------IRCTKGLSMHTFHGNFFVR--STDLLSLANINP----------------------DAGFAVQLSIEESL-------TDTSLVCFQ---TALLYTSS----KGERRIRVHTLCL----------------PVVSS----------LADVYAGVDVQAAICLLANMAVDRSVSSSLSD |
8 | 4bk4A | 0.17 | 0.13 | 4.28 | 0.63 | HHsearch-2 | | PSAPLNLIS-NVNETSVNLEWSSPQNTGGQDISYNVVCKKCGAGSKCRPGSGVHYTPVSDLAHTVSVTVTTNAPSSILEPDRPNGVILEYEVDQNRSARNTDIKGLNPLTSYVFHVRARTAAGY-----------------GDFSEPLETNVPSRII--------------------------- |
9 | 6agfB | 0.10 | 0.09 | 3.22 | 1.06 | Neff-PPAS | | ---EVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQ-----------------KGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSTNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKAN----RDMASIVSEIMMYVLIVVLTIWLVAEMIYCYKKI |
10 | 4wtxA | 0.16 | 0.08 | 2.72 | 0.63 | HHsearch | | MSAPGPLVFTALSPDSLQLSWERPRRPNGDIVGYLVTCEMAQGGGPAT-------------------AFRVDGD----------SPES-----------RLTVPGLSENVPYKFKVQARTTEGFG-----------------PEREGIITIES------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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