Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | GAVLVDADKNEILSAGYTKELPGNTHAEQCCFMKVAQQHNLPEEGIAQVLPKNTVLYTTMEPCNERLSGNLTCVERILRLNGAIKVVYVGVLEPEKFIGQNLGRKRLEDAGIQVTIVEGLQDRILEVAT |
1 | 3zpcA1 | 0.26 | 0.22 | 6.71 | 2.00 | SPARKS-K | | GCVIVKD--DQLIGEGFHPK-AGQPHAEVFALRQAGEQAQ------------GATAYVTLEPCAHY-GRTPPCAEALVKAQ--VKKVVVACPDPNPLVAGK-GVQILKNAGIEVEIG-ICEDLAAKLNQ |
2 | 3zpcA1 | 0.26 | 0.22 | 6.69 | 1.89 | FFAS-3D | | GCVIVK--DDQLIGEGFHPK-AGQPHAEVFALRQAGEQ------------AQGATAYVTLEPCA-HYGRTPPCAEALVK--AQVKKVVVACPDPNPLVA-GKGVQILKNAGIEVEI-GICEDLAAKL-- |
3 | 3zpcA | 0.26 | 0.22 | 6.70 | 2.58 | HHpred | | GCVIVK--DDQLIGEGFHP-KAGQPHAEVFALRQAGE------------QAQGATAYVTLEPCAH--YGRTPCAEALVKA--QVKKVVVACPDPNPLVAG-KGVQILKNAGIEVEI-GICEDLAAKLNQ |
4 | 2hxvA1 | 0.26 | 0.22 | 6.70 | 2.23 | MUSTER | | GAVVVK--DGRIIAEGFHPY-FGGPHAER-AIESARKKG---------EDLRGATLIVTLEPCD-HHGKTPPCTDLIIES--GIKTVVIGTRDPNPVSGN--GVEKFRNHGIEVIEG-VLEEEVKKL-- |
5 | 2hxvA | 0.25 | 0.22 | 6.72 | 1.72 | CNFpred | | GAVVVKD--GRIIAEGFHPY-FGGPHAERMAIESARKKG---------EDLRGATLIVTLEPCDHHG-KTPPCTDLIIES--GIKTVVIGTRDPNPVSG--NGVEKFRNHGIEVIEG-VLEEEVKKLCE |
6 | 3zpcA | 0.25 | 0.21 | 6.50 | 1.53 | HHsearch-2 | | GCVIVK--DDQLIGEGFHP-KAGQPHAEVFALRQAGE------------QAQGATAYVTLEPCAHY-GRTPPCAEALVK--AQVKKVVVACPDPNPLVAG-KGVQILKNAGIEVEI-GICEDLAAKLNQ |
7 | 2hxvA1 | 0.26 | 0.22 | 6.70 | 2.28 | Neff-PPAS | | GAVVVK--DGRIIAEGFHPY-FGGPHAER-AIESARKK---------GEDLRGATLIVTLEPCDHH-GKTPPCTDLIIES--GIKTVVIGTRDPNPVSGN--GVEKFRNHGIEVIEG-VLEEEVKKL-- |
8 | 3zpcA | 0.25 | 0.21 | 6.49 | 2.46 | HHsearch | | GCVIVK--DDQLIGEGFHP-KAGQPHAEVFALRQAGE------------QAQGATAYVTLEPCAHY-GRTPPCAEALVK--AQVKKVVVACPDPNPLVAG-KGVQILKNAGIEVEI-GICEDLAAKLN- |
9 | 3zpcA1 | 0.26 | 0.22 | 6.71 | 1.36 | PROSPECTOR2 | | GCVIVK--DDQLIGEGFHPK-AGQPHAEVFALRQAGEQ------------AQGATAYVTLEPCAHY-GRTPPCAEALVK--AQVKKVVVACPDPNPLVAG-KGVQILKNAGIEVEI-GICEDLAAKLNM |
10 | 2g84A | 0.19 | 0.16 | 5.25 | 1.36 | SAM | | AAAVFERDSGLLIAAGTNRVRCSAAHAEILALSLAQAKLD-------THDLSACELVTSAEPCVM-------CFGAVIW--SGVRSLVCAARSDDVEAIGENWMGGLEARGITVTT-GLLRDAACAL-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|