Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | YHRRVTYLCYQVQKANGNLLTKGCLRTKKGYHAESRFIKRICSLGLDQAQSYQVTCFLTWSPCPRCAQELVLFKSSHPHLYLRIFTARLYFHWRKSYQEGLQRLCRAQVPVAVMGYPEFAHCWYNFVD |
1 | 5w3vA | 0.61 | 0.61 | 17.45 | 2.36 | SPARKS-K | | YYPRKALLCYQLTPQNGSTPTRGHLINKKEDHAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPSCAGELVDFIKAHRHLNLRIFASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVD |
2 | 3vm8A | 0.40 | 0.40 | 11.76 | 2.44 | FFAS-3D | | NDRNETWLCFTVEGIKRRSWKTGVFRSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVY |
3 | 5w3vA | 0.61 | 0.61 | 17.45 | 6.85 | HHpred | | YYPRKALLCYQLTPQNGSTPTRGHLINKKEDHAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPSCAGELVDFIKAHRHLNLRIFASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVD |
4 | 5w3vA | 0.61 | 0.61 | 17.45 | 2.66 | MUSTER | | YYPRKALLCYQLTPQNGSTPTRGHLINKKEDHAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPSCAGELVDFIKAHRHLNLRIFASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVD |
5 | 3wusA | 0.39 | 0.39 | 11.55 | 1.84 | CNFpred | | YGRNESWLCFTMEVVKPVSWKRGVFRNQTHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVY |
6 | 5w3vA | 0.61 | 0.61 | 17.45 | 28.43 | HHsearch-2 | | YYPRKALLCYQLTPQNGSTPTRGHLINKKEDHAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPSCAGELVDFIKAHRHLNLRIFASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVD |
7 | 5w09A | 0.46 | 0.46 | 13.45 | 3.24 | Neff-PPAS | | KGRRETYLCYVVKRRDSASLDFGYLRNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCERKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVE |
8 | 5w3vA | 0.61 | 0.61 | 17.45 | 45.48 | HHsearch | | YYPRKALLCYQLTPQNGSTPTRGHLINKKEDHAEIRFINEIKSMGLDETQCYQVTCYLTWSPCPSCAGELVDFIKAHRHLNLRIFASRLYYHWHPNYQEGLLLLCGSQVPVEVMGLPEFTDCWENFVD |
9 | 3vm8A | 0.39 | 0.39 | 11.55 | 1.44 | PROSPECTOR2 | | NDRNETWLCFTVEGIKRRSWKTGVVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVY |
10 | 6bwyA | 0.44 | 0.43 | 12.59 | 1.63 | SAM | | -GRHETYLCYEVERMHNDTQRRGFLANQAPRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYD-DQGRAQEGLRTLAEAGAKISIMTYSEFKHCWDTFVD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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