Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | RIILSRKGFDSSSGGCPSPILPDGRMVSLPIPDSRSKIRYRDLKLVDVNAGRLVSQLTRKKIIGSSGAHLDPDLSIGHLPRLLGWRPLLGQTGSAQGHLHKQGIEPDDIFLFFGLFRDAEIHNRRWRFVPGSKPRHIIWGWLQIDEILPVDSLDNDAYSWLNYHPHLHGEADKGNTLYVARDYLSLPGIDKVPGSGIFDRFDPRLQLTQTGSEKPSQWQLPKWFFPGDRQPLSYHAKAGRWQQNKSHCLLSAVARGQEFVL |
1 | 5mz9A | 0.15 | 0.13 | 4.49 | 0.72 | SPARKS-K | | QIIFSGVGYDSSSSSSST---KDQALAWSTTTSLDSKTGYKDLVTNDTGLNGPINGSFTGPIKTAYPV---------KKDQKSTVKNSYGDEGIGVFDALNQEPSRTDQIFVYGIVSKVNWSNSGLKSIAPDGFANSIANFSVGLKAGID--PNP-----------VMSGKKANGAVVLTRGRLNFNPGNDS----LLSTTDNNIPISTPFTAAESAVDLTTF------KEVTYNQESGLWVTDNMGFSVITVSRGIELNQ |
2 | 3g7sA3 | 0.12 | 0.08 | 3.00 | 0.47 | FFAS-3D | | --------------------------------ELKYKIGFPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSE--FPESNFLEICEVTKKLASGISRKGVRKGEHVGV---------------CIPNSIDYVTIYALWRVAATVPINPYKSFELEHILNDSEAT-------TLVVHSLYENFKPVLEKTGVERVFVVGGEVNSLSEVDSGSEDFENVKVNPEEDVALIPY----------------TGGTTGPKGVL |
3 | 2ar1A | 0.16 | 0.08 | 2.56 | 0.28 | HHpred | | ---------------------------------------------HKFSIDDLAK------------------------QKTSPWD---GVRNAARNNMRA--MSVGDKVLFYHS----------------NTKEPGVAGLAEVVRLAYDDF-----TALDKTSEYFDPKATKEKMVDVKFVA-------------R---WDTVLTLHELKS-RRELQKMAL-FTQRR---LSVQPVASEYAY------------------ |
4 | 5n8oA | 0.12 | 0.11 | 3.94 | 0.70 | MUSTER | | QVLITDSGQRTGTGSALMAMKDAGVNTYR---WQGGEQRPATIISEPDRYARLAGDFAASVKAGEESVAQ-----------VSGVREQAILTQAIRSELKTQGVLGHPEVTMTALLRDMYRPGMVMEQWNPETRSHDRYVIDRVTASLTLRDAQGETQVVRISSLDSSWSLFRPEKMPVADERLRVTGKLRVSGGDRLASVSEDMTVVVPGRAEPASLPVSD--SPFTALKLENGWVETPGHSVSDSATVFASVTQMAMNA |
5 | 5veoA | 0.13 | 0.06 | 2.00 | 0.80 | CNFpred | | -----------------------INLGFLYWEEP--DDTGHDVGPDSPLMGSVISDVD-------------HKLG------------------YLIKMLKRAKLWNNVNLIVTSDHGMTQCSKRVIELDRY-KEHYTLIDHSPVAAILPKEGKFDEVYDALAGAH-------PNLTVYKKE-------------------------------------------------------------------------------- |
6 | 2pffB | 0.16 | 0.15 | 4.82 | 0.67 | HHsearch-2 | | ARIMAKRPFDKKS---NSALFRNAQLVAIDYFEELRYQTYGDLIFSAETLSELIRTTLDEKYLKGATGHSQGLVTAVAIAETDSWESFF------VSVRKAIT------VLFFIGVRCYEA------YPNTSLPP-SILEDLENNPMLSISNLTEQVQAGKQVEISLVN--GAKNLVVSGPPQAPSGLQSRIPFSEKFS--NRFLPVASP---FHSHLLVPASINKDLVKNVSFNAKDIQIDTDGSDCIIRLPVKWTQFKA |
7 | 1maeH | 0.09 | 0.08 | 3.08 | 0.91 | Neff-PPAS | | -----SILGHVNGGFLPNPVAHSGSEFAL------ASTSFSRIAKGKRTDYVEVFDPVTFLPIADI------ELPDAPRFDVGPYSWMNNADLLFFQFAAGPAVGLVVQ----GGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV--YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT |
8 | 1vk1A1 | 0.11 | 0.04 | 1.37 | 0.42 | HHsearch | | ------------------------------------------------------------------------------------WYPAFGDVN-VIERLKAEGLEV-------------IEDEKAE--EAEGEIAFALIGE----KSFAIPGGKSKVLDEMDQA-EI-------ELVYYGLKEDAKA---DM-EKGEID-Y----VF------------------------------------------IR---------- |
9 | 3g7sA3 | 0.13 | 0.08 | 2.93 | 0.89 | SP3 | | --------------------------------ELKYKIGFPSLYYPKISLADRIDAAA--EKFGEKTA-----IISAEPKFPSEFPESCEVTKKLASGISRKGVRKGEHVGVCI---------------PNSIDYVTIYALWRVATPVPINPYKSFELEHIL-------NDSEATTLVVHSLYENFKPVLEKTGV-------ERVF--VVGGEVNSL----SEVDSGSEDF-----ENVKVNPEEDVAL----------IP |
10 | 4qn9A | 0.10 | 0.09 | 3.39 | 0.89 | PROSPECTOR2 | | -----------------SKKGKDGRFVN-PWPTWKNPSIPNSSVPSSKEELDYFITNPEEAGVREAGLRVDPIFSSRASPSQYMGPKRFRRSPCSVIALNERFGNELRWFVPLGLLDWMQKCGCENVIELDWWEENCVPGHDKVTFVFTPSQHWC-------KRTLMDDNKVLWGSWSVLGPWNRAGDTGYCPAFEEIGKRFGPFDLGAYEPRWFMKYQHVDPWGTFALANEHYLEPPVKLNYGLNAEDFFVLKHGESRYL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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