Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | YTIESKQKNRFLRNGVFQNQDHPYTRLHAELRFLSWFHDNWLCPGNSYRVTFYMSWSPCSECAEELTTFLAGHRNVTLTIFFSKLYYCDPDSSNREGLKTLAAGGARLFVMFDTDFSYCWTN |
1 | 3vm8A | 0.46 | 0.46 | 13.39 | 2.26 | SPARKS-K | | FTVEGIKSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYF-QYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWEN |
2 | 3vm8A | 0.46 | 0.46 | 13.39 | 2.07 | FFAS-3D | | FTVEGIKRRSVWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQ-YPCYQEGLRSLSQEGVAVEIMDYEDFKYCWEN |
3 | 3vm8A | 0.46 | 0.46 | 13.39 | 5.08 | HHpred | | FTVEGIKSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQY-PCYQEGLRSLSQEGVAVEIMDYEDFKYCWEN |
4 | 3vm8A | 0.46 | 0.46 | 13.39 | 2.48 | MUSTER | | FTVEGIKRRVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYF-QYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWEN |
5 | 3wusA | 0.50 | 0.49 | 14.27 | 2.05 | CNFpred | | FTMEVVKSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYF-WDTDYQEGLRSLSQEGASVEIMGYKDFKYCWEN |
6 | 3vm8A | 0.46 | 0.46 | 13.39 | 21.09 | HHsearch-2 | | FTVEGIKSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQY-PCYQEGLRSLSQEGVAVEIMDYEDFKYCWEN |
7 | 5w09A | 0.37 | 0.36 | 10.70 | 2.82 | Neff-PPAS | | YVVKRRDSAFSLDFGYLRNKN----GCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNT |
8 | 3vm8A | 0.46 | 0.46 | 13.39 | 33.74 | HHsearch | | FTVEGIKSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQY-PCYQEGLRSLSQEGVAVEIMDYEDFKYCWEN |
9 | 3vm8A | 0.46 | 0.46 | 13.39 | 1.20 | PROSPECTOR2 | | FTVEGIKSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQ-YPCYQEGLRSLSQEGVAVEIMDYEDFKYCWEN |
10 | 6bwyA | 0.37 | 0.35 | 10.47 | 1.38 | SAM | | YEVERMHNDTNQRRGFLANQ----APRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYD-DQ-GRAQEGLRTLAEAGAKISIMTYSEFKHCWDT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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