>PF18747 (303 residues) MAKIIVIKGTSGTGKGTRVVQFIEWLRTKLKPTELSYTVGDKTRPFGLKFEELKLIFVGQ YTVSNKSGLASWTSMDAIHAATGSGDIARDLVKGWLAQGYTLVCEGEPLMLSDKWRPEWM FKNYPIDSLALLYFAYPDRYQYDARIRGRSGKEAGDSGWSRNESYSKEFEKSKAEMLALG WDVAVDDYSGQDVLYHQTATNTQEFKTGNDSELAMLPFDAPLWVVGNAIYHQLGTVCRAN NLMSKDFYGYCETNPMTREVGGQDPLAHRVPEKPQKASKTKNKAVAKEEPKTSSVSLLGL MRK |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MAKIIVIKGTSGTGKGTRVVQFIEWLRTKLKPTELSYTVGDKTRPFGLKFEELKLIFVGQYTVSNKSGLASWTSMDAIHAATGSGDIARDLVKGWLAQGYTLVCEGEPLMLSDKWRPEWMFKNYPIDSLALLYFAYPDRYQYDARIRGRSGKEAGDSGWSRNESYSKEFEKSKAEMLALGWDVAVDDYSGQDVLYHQTATNTQEFKTGNDSELAMLPFDAPLWVVGNAIYHQLGTVCRANNLMSKDFYGYCETNPMTREVGGQDPLAHRVPEKPQKASKTKNKAVAKEEPKTSSVSLLGLMRK | |||||||||||||||||||
1 | 5xtcw | 0.09 | 0.08 | 3.03 | 0.62 | SPARKS-K | RSRVITVDGNICTGKGK----LAKEIAEKLGFKHFPEAGTGDGKPLATDYNGN---CSLEKFYDDPRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFYNQGFIRKSVTICDYL--PPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENAYKKTFLPEMSEKCEVLQREAQDSKKVVEDIEYLKFDKGPWLKQD--------------NRTLYHLRLLVQDKFEVLN-----------YTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIW | |||||||||||||
2 | 4tmkA | 0.16 | 0.10 | 3.42 | 0.70 | FFAS-3D | -SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT-----QLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAA--RVQLVETVIKPALANGTWVIGDRHDQGGGRGIDQHMLATLRDAVLGDLTLYLDVTPEVGLKRARARGELDRIEQ---ESFDFFNRTRARYLELAA------------------------------QDKSIHTIDATQPLEAVMDAIRTTVTHWVKEL--------------------------------------------------------------- | |||||||||||||
3 | 4xrpA1 | 0.12 | 0.06 | 2.19 | 0.68 | HHpred | FPKLLILVGAPGSGKSTFARYFIRTEDNWV-----RVNR-DDFRL----------MQFGD---------SLM--SPFYEERI--TKMVEASVIALLKNRTNVIIDATNSSLR-SLQDMVHT--YTEYADISFKVFDLPVEELVKRCDKRCEQT-G-K-FIPKSAIEKHVTQLQYTKEKFDFKPIPRA-------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 6fmlG | 0.11 | 0.11 | 4.03 | 0.69 | MUSTER | RNQISIMDLDSATNLVMQFRKVCNHPDLFERADTSSPFFCGHFAETGSFLREVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIECDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPSMARFVTDGKLAKLDELLRE | |||||||||||||
5 | 2qorA | 0.12 | 0.07 | 2.56 | 0.79 | CNFpred | RIPPLVVCGPSGVGKGTLIKKVLSEFPS------------RFRFSISCTTRN-DYYFVDKDDFERKGQFLEFDKYANNFY-----GTLKSEYDLAVGEGKICLFEMNIN------GVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEI-----NKRMQELTREMDEADKVGFNYFIVN---------------------------------DLARTYAELREYLLGSYPQLRGG------------------------------------------------------------ | |||||||||||||
6 | 4xrpA1 | 0.14 | 0.07 | 2.48 | 0.49 | HHsearch-2 | FPKLLILVGAPGSGKSTFARYFIRTEDNW-----VRVNR-DDFR------LMQ----FGD------SL-MSPFYEERI------TKMVEASVIALLKNRTNVIIDATNSSLR-----SLQDHTYTEYADISFKVFDLPVEELVKRCDKRCEQTGKF---IPKSAIEKHVTQLQYTKEKFDFKPIPR-----------------------------ALKETSLT-------------------------------------------------------------------------------- | |||||||||||||
7 | 5xtcw | 0.12 | 0.10 | 3.62 | 0.99 | Neff-PPAS | RSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERYNQGFIRKQCVDHYNEVKSYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENAYKKTFLPEMSEKCEVLQYSARE----------------------------AQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQDKFEVLNYTSIPIFLPEV--------------TIGAHQTDRVLHQFRE | |||||||||||||
8 | 4xrpA1 | 0.14 | 0.07 | 2.38 | 0.47 | HHsearch | FPKLLILVGAPGSGKSTFARYFIRTEDN-----WVRVNR-DDFR------LMQ----FGD------SL-MSPFYEERI------TKMVEASVIALLKNRTNVIIDATNSSLR-----SLQDM---VHTYTSFKVFDLPVEELVKRCDKRCEQTGKF---IPKSAIEKHVTQLQYTKEKFDFKP-----------------------------IPRALKETSLT-------------------------------------------------------------------------------- | |||||||||||||
9 | 4cvnA | 0.21 | 0.12 | 3.89 | 0.86 | SP3 | -GMLIAITGTPGVGKTTIAKLLAEKLG------YEYVNLRDFALEKGCGREVD-----GEVEVE--------------------IDELAYFVEKELKDR-NVVLDGHL------------SHLMPVDLVVVLR---AHPRIIGERLRER------------GYSKEKIGENVEAELVDAILIEAIDEH-ENVIEVDTTNKT--------------------PEEIVEEIIGLIKSGVKRRVGIV-DWSEVYDEIIPYLRLG------------------------------------------ | |||||||||||||
10 | 3txaA1 | 0.07 | 0.07 | 2.73 | 0.96 | PROSPECTOR2 | TT--VETKELNQPNNSQRALKAGELIDKITSNKDNTIFDGTEATVSKGVADQNGKALNDSVSWDYHKTTFTATTHNYSYLNLTNDANEVNILKSRI---------PKEAEHINGDRTLYQFGATFTQKALMKAN------EILETQSSNARKKYAINFNPYISTSYQNQFNSFLNKIPDRSGILQEDFIINGDDYQIVKGDGESFKLFSDRKVPVTGGTTQAAYRVPQNQLSVMSNEGYAINSGYIYLYWRDYNWVYPFDPKTKKVSATKQIKGVNGDPGATPLEAEDDTNKIYDELNKYFKK | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |