Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | TNIDEPPYLFGFYNQLKQEYVSARYLLWEGITESEKYNKHFSDNDVYLLNTLDSTAYGLAIEQIKIAFRSTYSLFDKIAYFVNDYWGLKIPEAKKINFQSVWVDTHKGVKQLRSEFMKYPNLSLRGLYWISKDFIEQDNSNELVLGKTMEPEADKLRTIRNHLEHKYLKVHDNMWGYTDEKWGSFFSDQLAYHISHEELSQKTIRLIKMARAALMYLSMAVHQ |
1 | 6djyA | 0.13 | 0.11 | 3.89 | 0.75 | SPARKS-K | | TPLSMPVPLN--------EVATSKFFS----NVNDFDRDNQHFPDTTITQAYDTSLPDAEVAALKWFWKFFINLMDNVMYWACQFLSLPLERDVEIVFSGF----KGSHICMFSNLRQMN---LSPILCPYYDLITNFKT-----TTEIRAYVDAHEELKSLLTYTIVGLCDTFTETRNMDTGEYVQNVEKFCYTI----QNAKYMIQLVHVLLFPLTDNK-- |
2 | 3icqT1 | 0.10 | 0.08 | 2.80 | 0.71 | FFAS-3D | | -------QATDFIGSLRSSWKICHEIF--SEKTKYKPSTRL-ICLQTLSEKVREWNNESNLLELQMIRDSVWSYINAVQHLLTLLFLQLYPSN--------WND---FFASLQGVIAASSQSYLKVLLSIGDEIADSLVLKTDV-------QIQKDNLVKDAIRAN----------------------------DMSDIVSFVYEMMLTVGLCLQVYAQWVS- |
3 | 3brjB | 0.13 | 0.09 | 2.94 | 0.34 | HHpred | | ---------------------------------------------------------RLNSPSVRGFFIATVDVFNSIDGLIQRIFRKDNFAQ-S-VVGPLLQDSG----PLGD-L-SVRLKLLFGLGVLPDDIYH---------------DIEDIIKLKNHLNSDASDYEFTDPNILEKKVKKGQLNEPDDDIDLEFYQLQLQRQQQIIKSGLSLAIVEIC- |
4 | 5cwmA | 0.10 | 0.10 | 3.61 | 0.62 | MUSTER | | -------DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKES----SEEALERALRVA-EEAARLAKRVLELAEKQGDVALRAVELVVRVAELLRIAKESGSEEALERALRVAEEAARLAK-RVLELAEKQGDPEVARRAVELVKELLERIARESGSEEAKERAERVREEARELQERVKE |
5 | 2ongA | 0.12 | 0.10 | 3.61 | 0.75 | CNFpred | | --------AILDLNIVQAQFQEELKESFRWWRNTGVEKLPFARDRLVECYFWNTGIIEPQHASARIMMGKVNALITVIDDIYDVYGTLEELEQF-TDLIRRWDINS---DQLPDYMQLCFLALNNFVDDTSYDVMKEK-----------VNVIPYLRQSWVDLADKYMVEARWFYG---------------HKPSLEEYLENSWQSISGPCMLTHIFFRVTDS |
6 | 2pffB | 0.14 | 0.13 | 4.30 | 1.15 | HHsearch-2 | | GSLEHPTASFFIASQADDEPTTPAELGYVSSLVE-PSKVGQFDQVLNLENCYLEGN---DIHALAAKLLQNDTTLVKTKELIKNYITARIMAK-RPFNSALFRAVGEGNAQLVAIFGDDYFEELRDLYQTYHVLV----------GDLIKFSAETLSLIRTTLDAEKVFTQGLNILEWL--ENPSNTPDKDYLLSIPI--SCPLIGVIQLAHYVVTAKLLYEA |
7 | 5cwmA | 0.10 | 0.10 | 3.63 | 0.78 | Neff-PPAS | | -------DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKELLERIARESGSEEAKERAERVREEARELQERVKE |
8 | 5o5jT | 0.13 | 0.04 | 1.56 | 0.44 | HHsearch | | -ANIRTNERRRLRQSVKSSLRTAIRGFREAVDAG-------------------------DKDKASELLHATSRKLDKAASK-------GVIHPNQAA-------------NKKSALALA----LNKL------------------------------------------------------------------------------------------------ |
9 | 2yfaA | 0.10 | 0.09 | 3.44 | 0.69 | SP3 | | ------GSHMGDIGQLNKDLTDLRIARLQYMIANGDDT--AAANTLAKLDAFS-KQQAYLATTFKS--PENVKLLGELGDTISAYKL---------SLNKM-RQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQLISKARQQLLQVRIDVR-GYIAENSSANEQAALRQLDAALADTDNLKSEDARLQQFENAVLAYRDAVRQFRDAVAN |
10 | 1eq1a | 0.07 | 0.05 | 2.17 | 0.71 | PROSPECTOR2 | | DAPAGGNAFEEMEKHAKEFQKTFSEQFNSLVNSKNTQDFN---------------------KALKDGSDSVLQQLSAFSSSLQGAISDANGK-----AKEAL-----------EQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASN--------MEETN-----------------KKLAPKIKQAYDDFVKHAEEVQKKLHQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|