Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | LLHKLIGISISDSPDLARLGFSHFHLKRALVEISRHLLAQGASVAYGGDLRPDGFTQDLIEMVKAYNKQALELGEKIQNFLAWPLHLGQTVQFLAQHKNEITIRPIALPQELKQDFSIDEQKYLEPNSTVNQYIWSRCLTAMREQMAQQIDARIILGGKVVNYKGAFPGIAEEAALAISHHKPLFVLGAFGGCAKAVGEAMLGESPEVLTQAYQTAQSEDYAKMIQFYNQRANQGTSHKEINYTTLVETFQNTGFQGLNNGLTELENQNL |
1 | 1rcuA | 0.17 | 0.10 | 3.41 | 1.00 | HHsearch | | ---KKVVVVGYSGPVNK---SPVSELRDICLELGRTLAKKGYLVFNGGRD---GV-ELVSQGVREAG-------GTVVGILPDEEAG--N-----PY---LSVAVKT-------------------GL----D-------FQRSVLLRNADVVVSIGGE--------IGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGLDNRRIVEI------------------------HQAWTVEEAVQIIEQI----------------- |
2 | 3majA3 | 0.11 | 0.07 | 2.67 | 1.01 | SP3 | | AVARPIAIVGSRN--------ASGAGLKFAGQLAADLGAAGFVVISGL---ARGIDQAAHRASLSSG---------TVAVLAGGHDKIYPAEHEDLLLDII------------------QTRGAAISEPLGHVPRGKDFPRRNRLISGASVGVAVI------EAAYRSGSLITARRAADQGREVFAVPG--------------------------SPLDPRAAGTNDLIKQGATLIT----SASDIVEAVASIL---------------- |
3 | 1rcuA | 0.18 | 0.11 | 3.51 | 0.70 | SPARKS-K | | ---KKVVVVGYSGPVNKSPV---SELRDICLELGRTLAKKGYLVFNGG---RDGV-ELVSQGVREA-------GGTVVGILP---------------------------DEEAGNPYLS--VAVKTGLDFQR----------SFVLLRNADVVVSIGGEI--------GTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGK-------------------------YLDNRRIVEIHTVEEAVQIIEQI----------------- |
4 | 5ajtA | 0.16 | 0.12 | 3.95 | 0.94 | FFAS-3D | | --RAKICVFCG-----SSGGASPAHMEAA-RQLGRVMAENNIDLVYGG--GTVGLMGEVARTVCSINGPES-----VHGIIPEALVRYERDGTYQTVKDNKQVV-------------PTETVYGRTTVVKDMHTRKKMMAE-EVISGGPGSGFIGLGG---------YGTMEEVFEVITHTKGICLLNVEG-------------------------YWDGILQWINMAAAQGFVQPGNETIDAEGAVRALREYKVSEATFKLEWGR---- |
5 | 6co7A | 0.14 | 0.13 | 4.40 | 0.42 | HHpred | | LEIPNLVISVTGGAKS--FVLKPRLREMFRRGLIKAAKTTGAWIITGGTN--TGVMKHVGEAVKEQQLMFGDTQVNVIGIATWGIVDK-----QSDLISEGKYALYSMEPTPGQGAMLDPNHFFLDDGTEGKYG---VEIGMRSRIEEAIMVLLVLEG--------GPNTVATMYELIKKKVPAVVIDGSGRAASVVGFAYNHTIKRNEDEVRAKVGAKGADKTYSMIKDDEKSLDGEISQDIDLLKALLKANR-------SSPVAQLNL |
6 | 3be7A2 | 0.13 | 0.11 | 4.01 | 0.67 | MUSTER | | L------IVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTVRNVGAANY------ADVSVRDAIERGVINGPTMLVALGITGGHCDHNLLPPEFNYSSE-GVVDSPWEARKKYGADGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHMKVAAHAHGKAAIKAGVASFIDETIDMAIKNN---TVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIAGIFDHGDNAKQFAYMVEW-------GMTPLEAIQA |
7 | 3quaA | 0.18 | 0.11 | 3.74 | 0.85 | CNFpred | | --QWAVCVYCASG-------PTHPELLELAAEVGSSIAARGWTLVSGGGNV--SAMGAVAQAARAK-------GGHTVGVIPKALV-----HRELADVDAAELIVTD------------------------------TMRERKREMEHRSDAFIALPGG--------IGTLEEFFEAWTHDKPLILLDPFGH-YDGLLTWLRGLVPTGYV----------SQRAMDSLV---------VVDNVEAALEACAPE----------------- |
8 | 1rcuA | 0.17 | 0.10 | 3.41 | 0.88 | HHsearch-2 | | ---KKVVVVGYSGPVNK---SPVSELRDICLELGRTLAKKGYLVFNGGRD---GV-ELVSQGVREAG-------GTVVGILPDEEAG--N-----PY---LSVAVKT-------------------GLD-----------FQRSVLLRNADVVVSIGGE--------IGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGLDNRRIVEI------------------------HQAWTVEEAVQIIEQI----------------- |
9 | 4rdyA | 0.07 | 0.07 | 2.73 | 0.77 | Neff-PPAS | | -----LRLITEVVRWNWPHLYNEDEELKRAIDAVNAAKKYGVTIIDLTVAGIGCDVRFNEKVAKATG-------VNIIMGTGFYTYTEIPFYFKNRGIDSLVDAFVHDITIGIQGTNTRAAFVAVIDSSGLTKDVEMAIRAAAKAHIKTDVPIITHSF------VGNKSSLDLIRIFKEEGVDLARTVIGHVGDTDDISFIEQILREGAFGLDIYLPLDKRVKTAIELIKRGWIDVVRSTVPDWTMTLIFEKVIPRMRSEGITEEQINRV |
10 | 3majA3 | 0.12 | 0.08 | 2.73 | 0.98 | HHsearch | | AVARPIAIVGSRNASG--------AGLKFAGQLAADLGAAGFVVISGLAR---GIDQAAHRASLS---------SGTVAVLAGGHDKIYPAEHEDLLLQTRGAAISEPLGHV-----------------PRGK----DF-PRRNLISGASVGVAVIEAA------YRSGSLITARRAADQGREVFAVPGPAGTNDLIKQ----G---------------------------A-----TLITSASDIVEAVASIL---------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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