>PF17824 (408 residues) QTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAAL WAESEKSESKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPK WNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIG EWIGREENDADPLAAEMLQPPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHK KLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQ GRPTYPAEPQAKVTLNICSRCARLQGDNLEERTEESLPILHSPDEKIPDSFDSLPGTEEA LMEEGDGFEKASKLTGPGEASSGVGHSLKNYMEEDESLKQLQVIHQPW |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | QTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDADPLAAEMLQPPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVTLNICSRCARLQGDNLEERTEESLPILHSPDEKIPDSFDSLPGTEEALMEEGDGFEKASKLTGPGEASSGVGHSLKNYMEEDESLKQLQVIHQPW | |||||||||||||||||||
1 | 5mqfM | 0.07 | 0.07 | 2.81 | 1.29 | SPARKS-K | WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTV---DPFKATGKPHTLWVAFAKFYEDNDDARVILEKATKVN--------FKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNLEESLGTFQSTKAVYDRILDLNYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDFEQALDGCPPKYAKT----LYLLYAQLEEEWLARHAMAVYERATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLDRARAIY | |||||||||||||
2 | 3im4A | 0.21 | 0.02 | 0.78 | 0.78 | FFAS-3D | -RECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLEKEEAK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 4f9kA | 0.20 | 0.02 | 0.79 | 1.00 | HHpred | -KGCELYVQLHGIQQVLKDCIVHLCISKPERP-KFLREHFEKLEKEENRLARQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 3tnfB | 0.15 | 0.13 | 4.44 | 0.92 | MUSTER | EQAIKRAQENIKKGEELEKKLDKLERQG--KDLEDKYKTYEEN----------LEGFEKLLTDSEELSL--------------------------SEINEKMEAFSKDSEKLTQLMEKHK---------GDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQ--------EVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLK-LANLVHRKEKFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKE | |||||||||||||
5 | 5vjsA | 0.17 | 0.07 | 2.25 | 0.68 | CNFpred | AQEFQQLLQ--EIQQLGRELLKGELQ-----GIKQLREASEKARNP-----------------------------------------------------------------------------------EKKSVLQKILEDEEKHIELLETLQQTGQEAQQLLQEL------------------------QQTGQELWQL-GGSGGPELRQKHQQLAQKIQQLLQKHQQLGALEDEEKHIELLETILGGSGGDELRELL--------KGELQGIKQYRELQQLGQKA------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 4f9kA | 0.20 | 0.03 | 0.86 | 1.48 | HHsearch-2 | -KGCELYVQLHGIQQVLKDCIVHLCISKPERP-KFLREHFEKLEKEENRLARQKSN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 3tnfB | 0.13 | 0.11 | 3.83 | 1.95 | Neff-PPAS | EQAIKRAQENIKKGEELEKKLDKLERQGLEDKYKTYEENLEGFEKLLTDSEELS----------------------------------------LSEINEKMEAFSKDSEKLTQLMEKHK------GDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQ----------KGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLAAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQDWESIKDSPEKQKKAEHDFHKLQY---ETPMTVKKLVHHNKGLETTIHKERVEETKQQL | |||||||||||||
8 | 4f9kA | 0.19 | 0.02 | 0.79 | 2.07 | HHsearch | -KGCELYVQLHGIQQVLKDCIVHLCISKPERP-KFLREHFEKLEKEENRQARQKSN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5gaoE | 0.06 | 0.05 | 2.08 | 1.33 | PROSPECTOR2 | AAAAAAAAA--------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------AAAAAAAAAAAAAAAAAAAAAAAAAARAAA------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------AAAAAAAAAAAATTKEAYKKLSQKFHGTKSNKK | |||||||||||||
10 | 4f9kA | 0.21 | 0.02 | 0.62 | 0.47 | SAM | --GCELYVQLHGIQQVLKDCIVHLCISKPERP-KFLREHFEK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |