Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | VIPVRGLWYCYLQVKKVRLREAERLGPKSQCAAECGAAYWISWVLQHQQLLASEYTMKDGRGTRGSKPSCTVPALSATSQLLQLGSQNSDLQFVHQRAKKSVSSPSLLQFWCCLSRLSFHALNQKINSTNINIT |
1 | 1kanA2 | 0.08 | 0.07 | 2.63 | 0.74 | SPARKS-K | | --------------EAQKFHDAICALIVEELFEYAGKTFLPSLTVQVAMAGAMLIGLHHRICYTTSA--------SVLTEAVKQSDLPSGYDHLCQFVMSG-QLSDS-EKLLESLENFWNGIQEWTERHGYIVD |
2 | 3pdyA2 | 0.11 | 0.07 | 2.42 | 0.56 | FFAS-3D | | ------------------------------------ATKELMWLNEKEEEEVGF---------DWSDRNTNMTAKKESYSALELELKEKKIKELQNAGDRLLREAALQTQWSWMLQLC-CCIEAHLK------- |
3 | 2mbgA | 0.20 | 0.15 | 4.78 | 0.25 | HHpred | | ---------------------SIVLSPTVQ-----ISNRVLYVFFTHVQELFGNVVLKQVMKPLRWSNMATMPTLPETQAGIEIRRQEFLLNCLHRDLQGGIKDLSKEERWEV-QR-ILTALKRKLREA----- |
4 | 3wg6A | 0.20 | 0.19 | 6.23 | 0.93 | MUSTER | | KIPAVAKYFKRGHNDLDKLELALRSGFRHGTNKEIGIALKNVGLNRKDVFITDKYNSGNHTYD-GKHSKHQNPYNALKADLEDLGLEYVDLYLIHFPISEKSHGFDLVEAWRYLERAKNEGLARNIGVSNFTIE |
5 | 4kp3A | 0.20 | 0.10 | 3.10 | 0.56 | CNFpred | | -----------------------------------LPAYILFMCVRHADYLNDDQKV---------------------RSLLTS-----TINSIKKVLKKRGDDFETVSFWLSNTCRFLHCLKQYS-------- |
6 | 1vt4I3 | 0.16 | 0.13 | 4.22 | 0.55 | HHsearch-2 | | -------EYA-----LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIHHLKERMTLF-------------RMVFLDFRFLEQKIRHDNTLQQLKFYPYICDNDPKYERLV--NAILDFLP-KIEENLICSKYT |
7 | 6ftj1 | 0.11 | 0.09 | 3.21 | 0.66 | Neff-PPAS | | -------------------DPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINR---------YKQSRDVSTLNSGKKSLETEHKALTSEIASLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLKSAVEAER |
8 | 1m1jD | 0.14 | 0.11 | 3.84 | 0.58 | HHsearch | | ---------SCKYEKNWPICVDDDWGTK--CPSGCRMQGIIDD--TDQNYSQRIDNIRQQLA--------DSQNKYTSNRVILEGAQQLDENYRIVTLKQRVATQ--VNRIKALQ-NSIQEQVVEMKRLEVDI- |
9 | 5nddA | 0.07 | 0.07 | 2.81 | 0.54 | SP3 | | LFPAFLTASAYVLMRALADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLENSEKKRKRAI |
10 | 5cwpA2 | 0.08 | 0.07 | 2.69 | 0.53 | PROSPECTOR2 | | SSSDVN------EALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSS-----------EEVNEALKKIVKAIQEAVESLREAEESGDPEKREKARERVREAVERAEEVQRDPSGWLE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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