Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | PVVSIAYKVLEVFPKGRRVLITCHAPQASPPITYSLCGTKNIEVAKKVVKTHEPASFNLNITLKSSPDLLTYFCRAATTSGAHVDSARLQMYWEL |
1 | 4x5lA | 0.19 | 0.18 | 5.79 | 1.25 | SPARKS-K | | PQVLPFSFGESAADVGDIASANCVVPKGDLPLEIRWSLNSAPIVNGETLVRLNKRTSLLNIDSLNAFHRGVYKCIATNPAGTSEYVAELQV---- |
2 | 2y23A2 | 0.11 | 0.11 | 3.78 | 1.24 | FFAS-3D | | PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL------ |
3 | 5fm5O | 0.14 | 0.14 | 4.66 | 1.17 | HHpred | | SGILMAPKTFW-VNEGKHAKFRCYV-MGKPEPEIEWHWEGRPLLPDRRMYRDRDGGFVLKVLYCQAKDRGLYVCAARNSAGQTLSAVQLHVKEP- |
4 | 3b43A4 | 0.16 | 0.16 | 5.22 | 1.51 | MUSTER | | PRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--- |
5 | 3p3yA | 0.15 | 0.14 | 4.58 | 1.36 | CNFpred | | --------SSQMVLRGMDLLLECIASG-VPTPDIAWYKKGGDLPSDKAKFENFNKALRITNV--SEEDSGEYFCLASNKMGSIRHTISVRVKAAP |
6 | 3b43A | 0.14 | 0.14 | 4.65 | 0.25 | HHsearch-2 | | PRFVKKLSDIST-VVGEEVQLQATI-EGAEPISVAWFKDKGEIVRESIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE-- |
7 | 1ya5A2 | 0.17 | 0.17 | 5.55 | 1.28 | Neff-PPAS | | PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGET |
8 | 2y23A2 | 0.09 | 0.08 | 3.24 | 0.38 | HHsearch | | --PTVPVKSAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPYKMDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVF- |
9 | 4of8A2 | 0.16 | 0.16 | 5.26 | 0.84 | PROSPECTOR2 | | EAPKITQGDVIYATEDRKVEIECVSVGGKPAAEITWIDGLGNVLTDNIEYRRFTAKSVLRLTPKKEHHNTNFSCQAQNTADRTYRSAKIRVEVKY |
10 | 5k6uA | 0.16 | 0.15 | 4.89 | 0.85 | SAM | | -YFTAEPESRILGEVEETMDIPCRA-MGVPLPTLQWYKDAVPLSKLQRYKVLPSGG--LHIQKLSPEDSGIFQCFASNEGGEVQTHTYLDV---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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