>PF17730 (512 residues) IVISQMIDENKSRENRASLPLPCAIAQSRAHHAKQSLANRSGVNIHRAFALLPGRLGIPA PSDERGPEAELPPKEERPCGGPRRGFASITITARRVGPPARALVWGTAGDSLCPKCRAED TLFQAPPALANGAHPGRHQRSFACTEFSRNSSVVRLKVPEAHTGLCERRKYWVTHADDKE TSFSPDTPLSGKSPLVFSSCVHLRVSQQCPDSIYYVDKSLSVPIEPPQIASPKMHRSVLS LNLNCSSHRLTADGVDGLVNREPISEALKQELLEGDQDLVGQRWNPGLQESHLKETPSLR RVHLGTGACPWSGSFPLENTELANVGANQVTVRKGEKDHTTHCHASDHANQLSIHIPGWS YRAVHTKVFSGSSKRQQGEVCMTVSAPPVEQKPTRHFLPIGDSSPSDDCLSRDLSEPTER RHQSFLKPRILFPGFLCPLQDVCASLQEDNGVQIESKFPKGDYTCCDLVVKIKECKKSED PTTPEPSPAAPSPAPRDGAGSPGLSEDCSESQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | IVISQMIDENKSRENRASLPLPCAIAQSRAHHAKQSLANRSGVNIHRAFALLPGRLGIPAPSDERGPEAELPPKEERPCGGPRRGFASITITARRVGPPARALVWGTAGDSLCPKCRAEDTLFQAPPALANGAHPGRHQRSFACTEFSRNSSVVRLKVPEAHTGLCERRKYWVTHADDKETSFSPDTPLSGKSPLVFSSCVHLRVSQQCPDSIYYVDKSLSVPIEPPQIASPKMHRSVLSLNLNCSSHRLTADGVDGLVNREPISEALKQELLEGDQDLVGQRWNPGLQESHLKETPSLRRVHLGTGACPWSGSFPLENTELANVGANQVTVRKGEKDHTTHCHASDHANQLSIHIPGWSYRAVHTKVFSGSSKRQQGEVCMTVSAPPVEQKPTRHFLPIGDSSPSDDCLSRDLSEPTERRHQSFLKPRILFPGFLCPLQDVCASLQEDNGVQIESKFPKGDYTCCDLVVKIKECKKSEDPTTPEPSPAAPSPAPRDGAGSPGLSEDCSESQ | |||||||||||||||||||
1 | 1zvoC | 0.11 | 0.10 | 3.47 | 1.16 | SPARKS-K | -RLQLQESGPGLVKPSETLSLTCIVSGGPIRR--------TGYYWGWIRQPPGKGLEWIGGVYYTG-SIYYNPSLRGRVTISVDNQFSLNLMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSS--APTKAPDVFPIISGCRHPKDNSPV-VLACLITGYHPTSVTVTWYMTQSQPQRTFPEIQRRDSYTSSQLSTCVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEG----------SLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECP------SHTQPLGVYLLTPAQDLWLRDKATFTCFVVGSDLKDAHLTVPTGGVEEGLLERHSNGSQ-----------SQHSRLTLPRSLWNAGTSVTLNHPSLPPQRLMALREPAAQAPKLSLNLLASSDPPEAEVSGFSPPNILLMWLESGFAPARPPPQPGSTTPAPPSPQPATYTCVVSHEDS-------RTLLNASRSLEVSYVTDHGPM------------ | |||||||||||||
2 | 2nbiA | 0.14 | 0.13 | 4.44 | 1.46 | MUSTER | VLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCC-ATECRPDNP-MFTPSPDGSPPICSPTMLPTNQPTPP--------------EPSSAPSDCGEVIEECPTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPS----EVIEQCPCFLPYGDSSRPLDCTDPAVNRP-----------DCDVLPTPQNNCPACCAFERPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDN-----PMFTPSPDGSPPNCSPTMLPSPSP--SAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCLPFDDSSRPPDCTDPSVNRPDCDKLSTAIDFTCPTCCPTQC------RPDNPMSPSPDGSPPVCSPTMMPSPLPSPTE----- | |||||||||||||
3 | 2cseB | 0.07 | 0.07 | 2.79 | 3.62 | Neff-PPAS | --VSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVEVSCPMQSVVKLLDDQLPDDSLIRRYPVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPLKIDEATWLRMIPKTMGQIQVTDNTGTNWHFNLRGGTRVVNLDQIAPMRFVLDLG-GKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFPAP | |||||||||||||
4 | 2nbiA | 0.12 | 0.11 | 3.95 | 2.18 | PROSPECTOR2 | Q--PSDLNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPI-----------CSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFEC---SPDNPMFTPSPDGSPPNCSPT----------MLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDNVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCFL-PFDDSSRPPDCTDPSVNRPDCDKLSTAIDFTCPTCCPTQCRPDNPMFSPSPDGSPPVCSPTMMPSPLPSPTE | |||||||||||||
5 | 1zlgA | 0.09 | 0.08 | 3.17 | 1.14 | SPARKS-K | ARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEP-CKESGDLRKHQCQSFCEPLFPKKSYECLTSEFLKYILLVKQGDC--------PAPEKASGFAAACVESCEVDNECSGVNGCGHTCQVLKPRKEKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRW-YQFRVAAVNVHGTFTAPSKHFRSSKDPSAPPAPANLRLANSTVSVTVTIVWDLPEEPDIPVHHYKVFWSWMV-------SSKSLVPTKKKRDGFQNSVILEKLQPDCDYVGQTR-LKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRP--------------TRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYWFPEACAHNRTTGSEASSGMTHENYIILLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSAL-----------------KGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQ | |||||||||||||
6 | 5kcs1w | 0.10 | 0.09 | 3.35 | 0.62 | FFAS-3D | ---GTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGAEVYRSLSVLDGAILLISAKDGVQAQTGIPTKIDQNGIDLSTVYQDI---KEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEMSGKSLENCSLFPLYHGSAKSNIGIDNLIFYSSTHRGPSELCGNVFKIEHLRDSVRVSEKEKIKVTEMYTSINLCKIDRAYSGEIVILNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPRYYVDSTTHSFLGKVQMEVISALLQEK------YHVEIEITEPTVIYMERPLK--------NAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGY----LNQSFQNAVMEGIRYGCEQGLYG-------WNVTD---CKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSLSRAYNDAPKYCANIVDTQLKNNEVCIQEYRSDLTFFTNGRELKGYHVTTGEPVCQPRRPNSRIDKVR------ | |||||||||||||
7 | 2rmnA | 0.16 | 0.06 | 2.15 | 0.41 | HHpred | -----------------------------------------------------------SSTFDALSPSAIPSNTDY--PG-PHSFD-VSFQQS--S-TAKSATWTYSTELKKLYCQIAKCPIQIKVMTPPPQGAVIRAMPVYKKAEHVTEV----------VKRCPNHELS---REFNEGQ--------IAPPSHLIRVEG------NSHAQYVEDPSVLVPYEPPQVGTE---FTTVLYNFMCNSSCV-----GGM-NRRPILIIVTLE--TRDGQVLGRRCDRKADEDSIRKQQVSDSTKNGD---AFRQNTHG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 1zvoC | 0.11 | 0.10 | 3.71 | 1.43 | MUSTER | LQLQESGPGLVKPSETLSLTVSGGPIRRTGYYIRQPPGK-------------GLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL--RSMSA-GNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVV--LITGYHPT----SVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKTCFVVGSDL-KDAHLT-EVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASW-EVSGFSPPNILLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPATYTC--VVS------EDSRTLLNASRSLEVSYVTDHGPM------------ | |||||||||||||
9 | 2pffB | 0.18 | 0.15 | 4.88 | 0.79 | HHsearch-2 | --------------------MDAYSTRPTLSHG--SLEHVLLVP--TASFFIASQLQE---------------QFNKILPEPTEGFAADDTTPAELVGKVSSLVPSKVGDQLCLTEFENYLEGNDIHALAAKL-------------LQEND-TTLVKTKELIKNYITAMAKRPFDKKS--NSA-----------------LFRAVGEGNAQLVAIFGGQNTDDYFEELRLYQTYHVLVIKFSAESELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLLGFTPGELRSYLKGATGHTAVAIA-ETDSWESFFVSVRKAITVLFFIG--VRCYEA-----YPNTSPPSILEDSLE--NNEGVPSPMLSISNLTQEQQDYVLPAGKQVEISLRKAKA------PSGLDQSRIFSERKLKFSNRFLPSHLLVPASDLINKDLVKSFNA-KDIQIPVTFDGSDLRVLSISERIVDCIIRLWETTTQF-KATHIL--DFGPGNKDLDINPDDDY | |||||||||||||
10 | 3cm9S | 0.08 | 0.08 | 3.07 | 3.45 | Neff-PPAS | --KYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSGDDSNSNKKNADLQVLKPEPELVYANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG--RILLNPQDKDG------SFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSPYNRKESKSIKYWCLAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSS---YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSL----TLNLVTRADEGWGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDPR- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |