>PF17625 (362 residues) MDKRANSRKPFLFYNEDYYCERRKRYFYTNKVIFKKLDSYATNINRCKELLTDFFDYCLP KYYRRKNKFTLLFRLLEPVIKQAEASALTTVSNDQCRWLEINQFSNWEQQDNQYAHKWLI KVVGANIGQQILFIIKQVTKKFKTCNLGFYNYYKLFRRCLSILVFKHKEVFVKCLQVILK AAMPIKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHKMLPTEKQI ELSFEKCSKGIEVPLYEKLLLNHMMRINDDNLQWPSLINNKKIMEWNANRCFDESNKTLH VYIRQYYANNCRCVKKSFFKYNGWNRQGRFCRTKKFCHLVNLQLNKDGSKKLKLVQRKSD KL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDKRANSRKPFLFYNEDYYCERRKRYFYTNKVIFKKLDSYATNINRCKELLTDFFDYCLPKYYRRKNKFTLLFRLLEPVIKQAEASALTTVSNDQCRWLEINQFSNWEQQDNQYAHKWLIKVVGANIGQQILFIIKQVTKKFKTCNLGFYNYYKLFRRCLSILVFKHKEVFVKCLQVILKAAMPIKNKGVVKSNYAFAVTNALHYYIVDNPHLLCKDINVAIKVRRLLIKHKMLPTEKQIELSFEKCSKGIEVPLYEKLLLNHMMRINDDNLQWPSLINNKKIMEWNANRCFDESNKTLHVYIRQYYANNCRCVKKSFFKYNGWNRQGRFCRTKKFCHLVNLQLNKDGSKKLKLVQRKSDKL | |||||||||||||||||||
1 | 2pffB | 0.17 | 0.17 | 5.43 | 1.71 | HHsearch-2 | MDA--YSTRPLTLSLEHVLLVPTASFFIASKILPEPTEGFADEPTTPAELVGKFLGYVEPNCYLEGNDIHALAELIKNYITARIMARPFDKKSNSALFRAVGEGNA--QLVAIFYFEELRDLYQTYVGDLIKFSAETLSELINPSNTPDKDYLLSIPISCPLIGVIQYVVTAKLLPGELRSYLKIAETDESFFVSVRKAITVLFFIGVRPPSILEDSLEN----NE-GVPSPMLTQEQ-VQDYVNSHLKQVNQSLYGLTLRKAKAPSGLDQSRLPVASPNKDLVKNNVSFNAKDIQIPLRVSISE-RIVDCIIRLP-----VKWETTTQFKATHDGPLGVLTHRNKDGTGVRVIVAGTLDIN | |||||||||||||
2 | 1vt4I | 0.16 | 0.13 | 4.39 | 1.03 | HHsearch | ELRRLLKSKPYELVLLNVQNAKWNAFLSCKILLFKQFLSAATTTHEVKSLLLKYLD-CRPQDLPRETNPRRLSIIAESIRDGLA------------------------T-----WDNWKH--VNCDIIESSLNVLRKMFDRLPPSAHI--------PTILLSLIWFDSDVMVVVNKLHKYSLVEKQPKESIPSIYLELKVKLENEYAVDNIPKTFDSDDLIPPYDQYFYSHIGHHLKN-IEHPER--MTLFRMVFLDFRFLEQKIRHD-STA-------------WNASGSILNTLQQLKFYKPYI------CDNDPKY----ERLVNAILDFLPKI-EENLI-CSKYTDLLRIAQRGGGG- | |||||||||||||
3 | 5h7cA | 0.07 | 0.07 | 2.80 | 1.02 | PROSPECTOR2 | KFNKEQQNAFYEILHLPNLNEEQRN---------AFIQSLKDDPSQSANLLAEAKSLNLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELEQQSLLAEAKSLNVNQAVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAK----------------EATDKELVIYIVKILAELAKQSTDSELVNEIVKQKKQS | |||||||||||||
4 | 4gyoA | 0.08 | 0.07 | 2.72 | 0.74 | SPARKS-K | ------------------------------------------PSEEVAVKLNEWYKLIRAFEAEENQDLLLYFSLMEFRHRIMLDKLPVKPFSDMLNEIESNL--TGLLEYYFYYFRGMYEFKQKNF-ILAIDHYKHAEEKLEYVE--DEIEKAEFLFKVAEVYYHQTYFSMNYASQALDIYTKYELYGRRRVQCEFIIAGNLTDHLCSALEHARQLAAAYYNVGHCKYSLGDYEAEGYFKTAAAIFEEH-NFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEW----EDDMYLTKFRLIHELYLGSGDLNVLTFDLLESRQLLADAEDLLHDTAERFNQLEHRRLMNIKKKLAEQ | |||||||||||||
5 | 6bk8L1 | 0.12 | 0.07 | 2.35 | 0.86 | FFAS-3D | ----------------------------------------RENWEMIRSHVSPII-----SNLTMDNLQESHRDLFNIICKNVVDFTLNKQNGRLI-----------------PALSALIALLNSDIPDIGETLAKELMLMFV-----------------QQFNRKDYVSCGNILQCLSILF----LYDVIHEIVILQILLLLL--EKNSLRLVI---AVMKICGWKLALVS-KKTHDMIWEKLRYILQTQELSSTLRESLETLFEIRQKDYKCENFNELTMAFDTLRQK------------------------------------------------------------------------ | |||||||||||||
6 | 6gmhQ | 0.13 | 0.10 | 3.53 | 0.33 | HHpred | ---------------------HDEHYYNAVTTSY-NLARLMCEFHEAEKLYKNILRE-HPNYVDCYLRLGAMARDKGDWFKEALQI----------------------NQDHWSLIGNLHLAKQEWGPGQKKF--ERILKQPSTQSDTY-SMLAVWLQTLHQPREKEKRHQDRALAIY-KQVLRNDAKNLYAANGIGAVLAARDVFARDISDVWLNLAHIYVEQKQYISAVQM------YENCLRKFYKHQNTEVVLYLTLLKARHVAPSDT--VLMFNVALVLQRDEKSNLKEVLNAVKELELAHRYFSYLSKLAL------AATEARQCSDLAQYHVARAR------------------- | |||||||||||||
7 | 5vchA3 | 0.11 | 0.10 | 3.77 | 0.64 | MUSTER | EGEYPKGVPS-----GSYVDASALAVI--QTVREVSLNNVIEEVETVISVFQDLSELRFGPIIIDNGDSTHLDQLCREALSVLKGEHACQTILD-------ASETEATLLDVLDIYVALSTNLVGGFAQVFTTAKPVILQLCQSKS---KNKRSFAVGALSEIALGRDENFIQELLEALIISLTNDKSLEVRCNASYGVGLLIEYSVSAIYSPVLKSLYEILSVADEKNLATDEATKEIVDRTFSNVCGCVALEHTIPALLSH-LPFNTAFEEYDPIFKLLKLFQEQNSTIINEAPKVIAI-FATVFEKESERIELET------STLGREENLEKRKQFQSEEIKQQVIELLKHLNQQFNGA | |||||||||||||
8 | 1gcjA | 0.10 | 0.07 | 2.53 | 0.85 | CNFpred | ---------------------------------------------NLPTFLVELSRVLANPG------SQVARVAAGLQIKNSLTSKDPDIKAQQQRWLAID------ANARREVKNYVLQTLGSSASQCVAGIACAEIPVS-----QWPELIPQLVANVTNSTEHMKESTLEAIGYICQDIDPEQL---KSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFKESERHFIMQVVCEATQCTRVRVAALQNLVKIMSLYYQYMETYMGALFAITIEAMKS-------DIDEVALQGIEFWSNVC------------------------------------------------- | |||||||||||||
9 | 1vt4I | 0.13 | 0.11 | 3.76 | 1.47 | HHsearch-2 | MLPDHSSNIKLRIHSIQALRRKSKPYENCLLVLLQNAKAWNSCKTTRFKQVTDFLSAATTTHISLDHHSMTLPDEVKSLLLKLPRENPRRLSIIAESIRD---GLA--T-----WDNWKHVNCDKLIIESSLNKMFDRLSVFPPSAHI--------PTILLSLIWFDSDVMVVVNKLHKYSLVEKQPKESIPSIYLELKVKLENEY-----ALHRSIVDNIPPYDQYFYSHIGHHLK-NIEHPER--MTLFRMVFLDFRFLEQKIRHD-ST-------------AWNASGSILNTLQQLKFYKPYI------CDNDPKY----ERLVNAILDFLKIE--ENL-ICSKYTDLLRIALMAEDEA | |||||||||||||
10 | 3ulqA | 0.07 | 0.07 | 2.72 | 0.89 | Neff-PPAS | ------------------------SSSSIGEKINEWYMYIRRSIPDAEYLRREIKQELDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQRLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG-DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |