Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | MTLFCRTANSTAGYVDMNVCIGMIGVVCFVFGVFILIFCSTLKAFYVRQKTYHLLGTESDDEETTVWEKRRMESDTDF |
1 | 5oybA | 0.17 | 0.17 | 5.50 | 0.94 | SPARKS-K | | NITMCPLCDKTCSYWKMSACRASHLFATVFFSVFMALWAATFMEHWKRKQMRLNYRGFEEEEEAVKDHPRAEYEARVL |
2 | 2kncB | 0.10 | 0.09 | 3.29 | 0.47 | FFAS-3D | | ----GSKG------PDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERADTANNPLYKEATSTFTNIT |
3 | 4wisA | 0.10 | 0.08 | 2.87 | 0.33 | HHpred | | ------------SYFRFLVIPSAFGFGAWLLALLCGLWSVVFFEYWKKQEVDLAVQWGVRGVSSI-QQSRPFEWE--- |
4 | 4xnvA | 0.15 | 0.15 | 5.15 | 0.89 | MUSTER | | KTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYNPEDGDPDNGVNPGTDF |
5 | 4djiA | 0.05 | 0.03 | 1.17 | 0.57 | CNFpred | | ------------------NNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDL----------------------- |
6 | 5t42A | 0.10 | 0.05 | 1.90 | 0.45 | HHsearch-2 | | ------GSDKTLPDQGDNDNWWPAGIGVTGVVIAVIALFAIAKFVF-------------------------------- |
7 | 3j0fI2 | 0.06 | 0.05 | 2.27 | 0.87 | Neff-PPAS | | -----HGWPHEIVQHYYHRHPVYTILAVASATVAMMIGVTVAVLCACKARRECLTPYAIPTSLALLCCVRSANA---- |
8 | 5nl2A2 | 0.17 | 0.17 | 5.47 | 0.61 | HHsearch | | QPIDVRKYFGLGAYTQMLIPASIVGVIVFLFSVFMALWAATFMEHWKRKQMRLNYRWELNNLFEIGYEVDFN-AGLE- |
9 | 2kncA | 0.17 | 0.12 | 3.81 | 0.95 | SP3 | | -------GAMGSEERAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPP---LEEDDEEGE-------------- |
10 | 4bjmA1 | 0.12 | 0.12 | 4.12 | 0.40 | PROSPECTOR2 | | QPEFDRGFLRPFGAKMKFLKPDQVDLITYMAEKDKNVRDLAIKLRDAKQDSTKNGTPEIKQKYDKAYEKEKLVSEESL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|