>PF17544 (375 residues) VDNAQCNWKNIEQSFNEFPNDFAILHQECNNGLDTPINNIFIDAENNPHILLQQTVTPHQ NGTASILGQLYKVTNDYMFSQGNITETSGADFLGLNECTKEAAMNALQNYNAYKETLIPR ESFINTLANTLNHLGLSLDNVSPTEIGKDILDQLGKAYTDHTTERPHDDTNDGGYSGAYI AGVALGTLAVGTILGYCIKYGWDWYKGRNIKNENLDLEMQNKELAFVELLHKNFKNNAVI LDEVIKINNLHDIIKLAKSIKEYEFSILPLTNLNNEIVKLNSPSAIAINFDSLSGILHEI CKSLGGDDSFKTISNFARLITIIRTANPKSEEYKESITEIFEIFNPRYTDIDYQNCEMPL LADVSSLYDSSGIEA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VDNAQCNWKNIEQSFNEFPNDFAILHQECNNGLDTPINNIFIDAENNPHILLQQTVTPHQNGTASILGQLYKVTNDYMFSQGNITETSGADFLGLNECTKEAAMNALQNYNAYKETLIPRESFINTLANTLNHLGLSLDNVSPTEIGKDILDQLGKAYTDHTTERPHDDTNDGGYSGAYIAGVALGTLAVGTILGYCIKYGWDWYKGRNIKNENLDLEMQNKELAFVELLHKNFKNNAVILDEVIKINNLHDIIKLAKSIKEYEFSILPLTNLNNEIVKLNSPSAIAINFDSLSGILHEICKSLGGDDSFKTISNFARLITIIRTANPKSEEYKESITEIFEIFNPRYTDIDYQNCEMPLLADVSSLYDSSGIEA | |||||||||||||||||||
1 | 2pffB | 0.14 | 0.13 | 4.30 | 1.02 | HHsearch-2 | -----------MDAYSTRPLTLS--HGSLEHVLLVPTASFFIASEQFNKILPEEGFAADDPTTPAELVGLGYVSSLVEPSKVGQDQVLNLCLTEFENCYLNDIHALAAKLLQENDTTLTKELIKNYITARIMAKRP-------FDKKSNSALFRAVG-----EGNAQLVGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAELNILEWLENPSNTDKDYLLSIPISCPLIG--VIQLAHYVVTAKLLSYLKGATGHSQGLVTA-VAIAETDSWESFFVSVRKAITVLFFIYEAYP---NTSLPPSILEDSLENNEGVPSPEQVQDYVNKTNS-HLPGKQEISLVNGAKNLVAKAPSGLDQSRIPF | |||||||||||||
2 | 3oc3A2 | 0.08 | 0.07 | 2.96 | 1.09 | PROSPECTOR2 | SIPPE-RLKDIFPCFTSPVPEVRTSILNMVKNLSEEAEVVLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYE----DLYFTKSGINVV-----------GKDEILKNRCLLFECIMKSGLPDLQISLYRSVQALVKDTPYTPANIEESAPGIRSIHPMVDPLYSDYTRMVAKQFLHLFSKMITEYYDAEKISIDNFGLASGKDGFLSFFEVFNTRLLAHSFFHKIGSLENRLDFFSKTIHIYTKTSQIQKIGFVFDDALREKNITVINGFMRSLEFNEKFVRKALEDLDVELLDAVLMSPLLRNISGNIDREASSKVLSKVIPTLGFSTNTKISKD-----LLEMIEREKKSLESL | |||||||||||||
3 | 3zh9B | 0.10 | 0.07 | 2.78 | 0.61 | SPARKS-K | ------MVFDVWKSLKKVHPTVSRIRQTVVDLEEDPLDQAIPFMGERRLVIVKNTGEKKKEKIEHNVSALESYIQSPA---------PYTVFVLLEKLDEKKLTKALKKHAFMMEKELNAKETTDFTVNLAKTEQKTIGT----EAAEHLVLLVN----------GH------------------LSSIFQEIQKLCTFIG----DREEITLDDVKMLVARSLEQNIFELINKIVESLQIFYDLLKQNEMALISNQFRLILQTKYFAEQGYGQKQIASNLKVHP-------FRVKLAMDQARLFSEEELRLIIEQLAVMDYEMKTGKKDK---QLLLELFLLQLLKR---------------------------- | |||||||||||||
4 | 6bfiA1 | 0.15 | 0.10 | 3.25 | 0.86 | FFAS-3D | ---VKFHTKTLESVIDPVAQQVGQLVLFH-----------------------EQAESGLLKEDLTPLVQGVGIAVTNLVQVAASMVETSND-----EDFKAELPPSMQEV----------QQAAVFLSDAARLL---KADQGSPEGKRKLLDGAR--------------------------GVINGMSDLLMCA----------------------------DRSEVRKMVKVCRSVQEYLDVAKVIDVEADLATFLQNLTP---GMTSMMKVVEQRHPELTNLAHAQMLKSELGTVREQIPIL-----ISSIRVCCLVIDAAFGRDYVIQKLFIAIEEIIRVLQLTTTFEE----------------------- | |||||||||||||
5 | 2pffB | 0.15 | 0.12 | 4.15 | 0.43 | HHpred | -----------------------------------------MDAYSTRPLTLSHG----------SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGPTTPAE-LVGKFLGYVSSLVPSKQFDQDIHALAAKLLQENDTKTKELIKNYITARIKRPFDKKSEGNAQLVGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAELNILEWLENPSNTDKDYLLSIPISCPLIG--VIQLAHYVVTAKLLSYLKGATGHSQGLVTA-VAIAETDSWESFFVSVRKAITVLFFIYEAYP---NTSLPPSILEDSLENNEGVPSPEQVQDYVNKTNS-HLPGKQEISLVNGAKNLVAKAPSGLDQSRIPF | |||||||||||||
6 | 6ek4A | 0.11 | 0.10 | 3.46 | 0.69 | MUSTER | VKTLSQAVKNIWRLSHQQKSGIEIIQEKTLR-ISLYSRDLDEAARASVPQLQTVLRQLPPQDYFLTLTEIDTELEDPELDDETRNT------------LLEARSEHIRNLKKDVKGVISLRKEANLMASRIADV----SNVVILERLESSLKEEQERKAEIQADIAQQEKN--------KAKLVVDRNKIIESQDVIRQYNLDMFKDYIPNISDLDKLANPKKELIKQAIKQGVEIAKKILGNISKGLKYIELADARAKLDEINQINKDCDDLKIQLKGVEQRIAGIEDVHQIDKERTTLLLQAA----EQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLDFLDDLLQYHSMLLS------------------- | |||||||||||||
7 | 2qmrA | 0.11 | 0.09 | 3.15 | 0.81 | CNFpred | --------DTLVFAFSKYHKNLLILYDAIGTLADSVGHHLNKP-EYIQMLMPPLIQKWNMLDEDKDLFPLLECLSSVATAL-------QSGFLPYCEPVYQRCVNLVQKTLAQAMLN-FMIVALDLLSGLAEGLGGNIEQLV--NILTLMYQCMQ-------------------DKMPEVRQSSFA--LLGDLTKACFQHVKP------CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEPYIPMVLHQLVEII-------NRPNTPKTLLENTTIGRLGYVC-MLQQFIRPWCTSLRIRDNEEKDSAFRGICTMISVN---PSGVIQDFIFFCDAVAS----------------------------- | |||||||||||||
8 | 2pffB | 0.16 | 0.14 | 4.72 | 0.70 | HHsearch-2 | GSLEHVLLVPTASFFIA-----SQLQEQFNKQFDQVLNLCLTEFENCYLEGLAAKLLQ-ENDTKELIKNYITARIKRPFDKKSSALEGNAQLVAITDDYFEELRDLYQTYHVLVGDLIKAETLSELIRTTLDA---------------------EKVFTQGLLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTTPGELRSYLKGATGHSQGL-VTAVAIAETFFVSVRKAITVLFFIGVRCYEATILEDSLENNEGVPSPM---LSISNLTQEQVQVN-KTNSHLPAGKQ---VE--ISLVNGAKNLVPPQSLYGLNLTLRKAKAPSHLASDLINKDLVKNNVSFKDIQIPVYDTFDGSDLLSGSISERIVD | |||||||||||||
9 | 6ek4A | 0.09 | 0.08 | 2.97 | 0.80 | Neff-PPAS | VKTLSQAVKNIWRLSHQQKSGIEIIQEKTLR-ISLYSRDLDEAARASVPQLQTVLRQLPPQDYFLTLTEIDTELEDPELDD---------------ETRNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNVVILERLESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQYN---------LADMFKDYIPNISDLDKLDLANPKKELIKQAIKQGVEIAKKILGNIKYIELADARAKLERINQINKDCDDLKIQLKGVEQRIAGIEDVHQIDKERTTLLLQAA--KLEQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLDFLDDLALQYHSMLLS------------------ | |||||||||||||
10 | 1lshA3 | 0.14 | 0.03 | 1.19 | 0.38 | HHsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FPSSASSLF-----VTKGKNL------ESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDA------GVLQSIWHKLHQQKDYRRWILDAVPAMATSEALEQLTSAE- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |