Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | CDLSINNDRNKIDGASHFKKKYMDNLNYQCLSKKESEAKNSQIKLDENNNKNHFYSSRVSNVSNYYDRTHISCKKN |
1 | 5jcss | 0.11 | 0.11 | 3.83 | 1.04 | SPARKS-K | | MNMKLSPNATAIMEGLNLLKYLLNNIVTPEKFQDFRNRFNRFFSHLEGHPLLKTMSMNIEKMTEI-ITKEASVKFE |
2 | 1kveB | 0.13 | 0.12 | 4.08 | 1.11 | Neff-PPAS | | ADEAIDKGTPS--------KNDLQNMSADL-AKNGFKGHQGVACSTVKDGNKDVYMIKFSLAGGSNDPGGSPCSDD |
3 | 6nuwJ2 | 0.10 | 0.09 | 3.41 | 0.99 | SPARKS-K | | -SLSLETLIDALYKINDLLQQRLQILDDAIQEKTSELAEFENMVRSPSAGDNA-----IPGLLQIIQSYINLLEEN |
4 | 5jxfA1 | 0.19 | 0.12 | 3.82 | 0.28 | FFAS-3D | | --------ASKYAGVANYWKKWIGESKSNAIGLKQNFEKDFQQKVIAAGKQNEYG--------------------- |
5 | 1dmuA | 0.15 | 0.09 | 3.09 | 0.31 | HHpred | | ---NKQYLEDNPEIQEKIELYGLNLL-NEVISDNEEEIYNEANFLFWMNY-------------------------- |
6 | 6etxG | 0.12 | 0.12 | 4.20 | 0.77 | MUSTER | | VPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKES |
7 | 1dmuA | 0.15 | 0.05 | 1.78 | 0.68 | CNFpred | | ------------EIQEKIELYGLNLL-NEVISDNEEEIRA------------------------------------ |
8 | 1vt4I | 0.21 | 0.21 | 6.68 | 0.66 | HHsearch-2 | | MDFETGEHQYQYKDLSVIDHIIMSKDNYKFLMSPESTISIPSIYLELKVKLENEYALHRSIVDHYIPKTFDSDDLI |
9 | 6nuwJ2 | 0.10 | 0.09 | 3.41 | 1.10 | Neff-PPAS | | -SLSLETLIDALYKINDLLQQRLQILDDAIQEKTSELAEFENMVRSPSAGDN-----AIPGLLQIIQSYINLLEEN |
10 | 5xauB | 0.22 | 0.17 | 5.38 | 0.41 | HHsearch | | KTL-LAQANSKLQLLKDLERKYEDNQRY--LEDKAQELLEGEVRS---------LLKDISQKVAVY----STCL-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|