Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | MAIGFICSSPDAELFSEKSRMSSSVLLGCLLCCMDWSAAVPGKTEPFRKPFVAIMIKKLKSCFAAYLSDLEQGSMCDMANASPTSLELGLSKLDKES |
1 | 6me6A1 | 0.11 | 0.11 | 4.06 | 0.72 | SPARKS-K | | DNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYL |
2 | 5nrlA | 0.18 | 0.16 | 5.37 | 0.43 | FFAS-3D | | -------AYYDLELRNSRQKKARTILQHLSEAWRCWKANIPWDVPGMPAPIKKIIERYIKSKADAWVSRIKRGAHVEKTMVKKNLGRLTRLWIKNE- |
3 | 6avhA3 | 0.21 | 0.18 | 5.58 | 0.24 | HHpred | | ----SLQVSPHAITTCADTTQSMYCQLLCGLLERNVA----RLGAPF-ASSFLKVIKFLEDHWPELCSNIRTGRLSDW--ITDATCTSGIGKF---- |
4 | 5cqcA2 | 0.23 | 0.20 | 6.15 | 0.59 | MUSTER | | VQL-FIVALEDGKLRSQQSKTAVELLIGILNDIKGKNEISESQYDKLVKEVDCLMDSSLGKLVQFHLKNL--GA---------ESLQLVLPCVKFD- |
5 | 4mmiA | 0.09 | 0.04 | 1.59 | 0.52 | CNFpred | | ---------------------EVSDRVQSLPPTFSLFVNS----PAFTPAFLMEFLNSYHQQADYLSTHYA-------------------------- |
6 | 3bqoA | 0.25 | 0.22 | 6.72 | 0.34 | HHsearch-2 | | ---------EDAGLVAEAEAVAAGWMLDFL-CLSLCRAFRDGRSEDFRRGLSACQLRTIYIC--QFLTRIAAGKTLDANDERITPLESALMIWGSIE |
7 | 5yfpE2 | 0.09 | 0.08 | 3.14 | 0.68 | Neff-PPAS | | -------IDFENHSVIIETS-MQNLINDVETVIKNESKIVEKATHVIQLFIQRVFAQKIEPRFEVLLRNSLSISILHGLFTLFGKFTKSLIDYFQLL |
8 | 2ontA | 0.25 | 0.14 | 4.48 | 0.35 | HHsearch | | ---------------------------------TSILDIRQGPKEPFRD-YVDRFYKTLRAEQS---QEVK-NWMLLVQNANPDCKTI-LKALGPG- |
9 | 4z6gA2 | 0.11 | 0.10 | 3.70 | 0.54 | SP3 | | ------ISATEVDSRWQEYQSRVDSLIPWIKQHTILMSD--NQYIHFKILAKEREKGRIEELYKLLEVWIEFGRIKLPQGYHPNDVEEEWGKLIIEM |
10 | 1w9rA | 0.09 | 0.08 | 3.16 | 0.47 | PROSPECTOR2 | | ------GSHMPEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRNEKAEEEAKRKAAEEDKVKEKP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|