>PF17461 (348 residues) KGLLSRFLTAPDRHPKLRYVYDIALIAISILCIVSIILWTQGSGLALFAIAPALAIGALG VTLLVSDLAESQKSKEIADTVAAVSLPFILTGTAAGLMFSAIAVGGGAVILANPLFLMGS MTLGFALMSLHRVTYQYLSNREQWKQQKKLEQVELAAWESHLPKESKSSALEEVRYSPRL MKRGKTWRKRAIRRKNYTPIPLVDKTLQTMQPDALFSSTTTHSTDSEQILTSVSPQSSDT ESSSSSSFHTPPNSDKELSDSNSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTT RRVVKLSRSERNAQHHRNKDQEQRQDSSESSEEDSSSDSSQKKKPSRK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KGLLSRFLTAPDRHPKLRYVYDIALIAISILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVSDLAESQKSKEIADTVAAVSLPFILTGTAAGLMFSAIAVGGGAVILANPLFLMGSMTLGFALMSLHRVTYQYLSNREQWKQQKKLEQVELAAWESHLPKESKSSALEEVRYSPRLMKRGKTWRKRAIRRKNYTPIPLVDKTLQTMQPDALFSSTTTHSTDSEQILTSVSPQSSDTESSSSSSFHTPPNSDKELSDSNSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTTRRVVKLSRSERNAQHHRNKDQEQRQDSSESSEEDSSSDSSQKKKPSRK | |||||||||||||||||||
1 | 3jd8A3 | 0.09 | 0.09 | 3.40 | 0.87 | SPARKS-K | AIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSYIGLPTLIVIEVIPFLVLAVILVQAYQRDERLQTLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSINKVDIGLDQS--LSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYGFAPSSWIDDYFDWVKPQSSCCRVPEGKQRPQFMRFLPMFLSDNPNPNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVF | |||||||||||||
2 | 5v4sA | 0.14 | 0.12 | 4.02 | 0.86 | FFAS-3D | ---------------RIRVYWDILVFICIFWASLESPLRIVLLLYLLLGVTRILKVFRISLQRINLAFQPTPGILRLVLFAFWATLVAHWCAVGIALYWTVATVGYGDIIYTIFVMILGAGVYATVIGNIASILGSL--DLAKAAQRKKMAQVDSFLKARNISQNIRRRVRDYYMY---IIDRGWGEDENALLND--LPISLRREVKIQLHRDLL-EKVPFLKGADPALVTSLV-------FSMKPMIFLEGDTI------FRRGEKGDDLYITILLSLQEGQFFGMDAPRSATVRATTTCEIYTLSKTDFDNVLKRFSQFRSAIEES-------------------- | |||||||||||||
3 | 3jd8A | 0.12 | 0.09 | 3.04 | 0.39 | HHpred | ---FINFVKYKNPNLTISFTAEVFTVVISYAIMFLYISLALGHMIAVIEVIPFLAVGVDNIFILVQAYQRDELDQQLGRVLGEVAPSMFLSSFSETVAFFLGAL--------SVMPA----VHTFSLFAGLAVFIDFA--EDGTSVQ------------------ASESCLFRFNSYSPLLLKDWMRPIKSISQHAGPPVYFVLEEGHDYTSQNMVCGGM--GCNNDSLVQQIFNAAQLDNFAPSSDYFDWVKPQSSCCRVEGKQRPQGGDFMRFLPMFLSDNPN--------------------------------------------------------------- | |||||||||||||
4 | 6me2A | 0.12 | 0.12 | 4.16 | 0.74 | MUSTER | ASALACVLIF--RNKKLRNIF-VANLVVAIYPYPLVLMSINNGGYLHCQVSAFLMGLSVIGSIWIHSLKYDKLSKNSLCYVLLILLTLAA--VLPNLRAGTLQYDPRCTFAVSSAYTIAVVVFHF-LVPMIIVIFCYLRIWILVLQVRGIDSFWNESYLTG-SRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIASAVGGLRDIITNETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSKLKPQDF | |||||||||||||
5 | 5t0oA | 0.14 | 0.06 | 2.07 | 0.80 | CNFpred | IIVMYMFLKN-------FRATLIPMIAVPVSLLGTFAGLY-INLLTLFALILAIGIVVDDAIIVVENIDRILVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCA-FKFVKKFNDFFDWSTSVFSAGV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
6 | 2pffB | 0.18 | 0.18 | 5.78 | 0.68 | HHsearch-2 | NLCLTEFENCYLEGNDIHALAAKTKELIKNYIIMAKRPFDKKSNSALFRAVGEGN--AQLVAIFGGQGNTDDYFEELRDLLVGDLIELIRTTLDAEKVFTGLNI---LEWLENPSYLPISCPLIGVIQLAHYVVTAKLLGLRSYLKQGLVTAVAIDSWESFFVSVRKAITFIGVRCYPSILEDSLENNEGVPSPISNLTQEYVNKTNSHLPAGKQVEISLVNG-AK-NLVVSGPPQSLYKAPGLDQS--RIPFSERKLKFSNPVASPFHSHLLVPASDLINKDVKNVSFNAKDIQIPGSDLRVLSGSISERIVDRLPVKWETTTQFKATHILDGASGLGVLTHRNKDD | |||||||||||||
7 | 3tnfB | 0.08 | 0.08 | 3.14 | 0.83 | Neff-PPAS | EELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDS----EELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLEDWESIKDSPLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK------ | |||||||||||||
8 | 6n3tA4 | 0.16 | 0.07 | 2.48 | 0.66 | HHsearch | GGISEKY--LPPDNAVRQSQRKLPLALILIVTTTVLMFLAFGHGSGLMNYMIGLIIVILSTVFLVSRMVEARTAEAIRIGTATTGRLITGAALILAVVAGAFVFSDLVMM--KYLAFGLLIALLLARMFLVPAVMKLLGDDCWWAPRWMKRVQEKLGLGETELP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3l0mA | 0.11 | 0.09 | 3.45 | 0.50 | SP3 | ---------------------------------------PLGSPYSDAKALDEVAKIRELGVQRVTRIENLENAKKLWDNANSLEKGNISGYLKAANELHKFKEKNLKEELSDKTISPKGYAILQSLWGAASDYSRAAATTESTVEPGLVSAVNKSAFDCKLSPNERATPDPDFKVGKSKILVGIQFIKDVADPTSKIWHNTKALNHKIAAIQKLERSNNVNDETLESVLSSKGENLSLSYKYATKDEGREHRYTASTENFKNVKEKYQQR-GDALKTEILADFKDKLAEATDEQSLKQIVAELKSKDEYRILAKGQGLTTQLLGLKTSSVSSFEKVEETRESIKSQE | |||||||||||||
10 | 3tnfB | 0.09 | 0.08 | 3.14 | 1.20 | PROSPECTOR2 | LDAIKRAQENIKKGEELKLERQGKDLEDKYKTYEENLLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHD--IKAKLANLQVLHDAHTGKKSYVNNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLK----------------LANLQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQGEDWESIKDSPEKQKKAEHDFHKL--------------QYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEI------ANNISK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |