Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VAPIKGQDHFLNLVFPERVAAAYMSPLAQKYPKAALSIASLAGFLLGILKLITFPVLCAAGLFVFPIRGLISCLFHKSFQGCSGYVLATFLSLFSLALTIVGIVSCITWAPGFIFPMISVSIAFATVETCFQIYTHLFPALEHKPSSSLKIEI |
1 | 5uj9A3 | 0.07 | 0.07 | 2.76 | 0.81 | SPARKS-K | | VIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFASLFAVILVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQD |
2 | 4hkrA | 0.19 | 0.16 | 5.05 | 1.05 | FFAS-3D | | -----------------YLSWRKLQLSRAKLKASSKTSALLSGFAMVAMVLIAFAICTTLLVAVHMLALMISTCILPNIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAFHFYRSL---VSHK--------- |
3 | 5llmA | 0.15 | 0.12 | 3.96 | 0.34 | HHpred | | ----DVKSFLRRNALLLLTVLAVILGFLPLSPREVKYFAFPGELLMRMLKMLILPLIVSSLI-----TGL-ASLDAKASGRLGMRAVVYYMSTTIIAVVLGIILVLII-HPE-------------VLDCFLDLARNIFPSNLVS--------- |
4 | 5uj9A3 | 0.11 | 0.11 | 4.00 | 0.87 | MUSTER | | LIYFFVQRFYVASSRQKRLESVSRSPVYSHFNETLLGVSVIRAFEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFASLFAVISRLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQD |
5 | 5xtcr | 0.10 | 0.08 | 3.16 | 0.81 | CNFpred | | -------AYTMAFMVKMPLYHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHS------------- |
6 | 5tj5A | 0.17 | 0.15 | 4.97 | 0.82 | HHsearch-2 | | KDGKPAPGLLNMLLSPGTI-------DDELYPHQAK-----VQVFLLLMALVCIPWLLLVKPLHFKIHTIEFCLN--CVSHTASYLRLWALSLAHAQLSSVLVFMTVALFAMWFALTCAVLVLMETSAMLLRLHWVESMSKPYEPFAYKDMEV |
7 | 5kbwA | 0.11 | 0.09 | 3.34 | 0.80 | Neff-PPAS | | --FPQASFLKYDSEIPALIVSFLLG------PGVGMFVVLVKDILFFLMKDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPLYFKFFPFILAFNLVKFGIDSVVTFFVYKKVSSIL------------ |
8 | 5llmA | 0.15 | 0.11 | 3.72 | 0.61 | HHsearch | | -------------------TKEDVKSFLRRNAREVKYFAFPGELLMRMLKMLILPLIVSS---------LITGLDAKASGRLGMRAVVYYMSTTIIAVVLGIILVLII-HPE-------------VLDCFLDLARNIFPSNLVSAAFGMNIG- |
9 | 5k7vA1 | 0.15 | 0.12 | 3.98 | 0.59 | SP3 | | ---------------IEEVVAEMIDILAESSKKSIEELARAADN-KTTEKAVAEAIEEIARLATAAIQLIEALAKNLASEEFMARAISAIAELAKKAIEAIYRLADNHTTDTFMARAIAAIANLAVTAILAIAALAS----NH---------- |
10 | 2lyiA | 0.10 | 0.10 | 3.65 | 0.76 | PROSPECTOR2 | | MHHHHHHSGSLGDQLTSTLASNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRPGSSPAVYAKAIAAPSVQILVAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQTSVQMGG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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