Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | MELNKTSESLFSAKIDHNHPRTEAHEPRDQREVRVFSLEGRSSTRQEKADRMPGRTSSRQESSKGSEEGAVHESTAGVSSKEEEESKGDGFFTGGNPTSGMALVETPMAVVSEAMVETSTMTVSQVDLQWVEQLVTSTVESLLVADIDGKQLVEIVLDNSNTVPAAFCGANLTLVQTGEEISVSFSNFVDQAQLTEATQLVQQNPKQLVSLVESLKARQLNLTELVVGNVAVSLPTIEKIETPLHMIAATIRHHDQEGDQEGEGRQDQHQGQHQEKKVEEAHI |
1 | 5j67A | 0.11 | 0.10 | 3.58 | 0.58 | SPARKS-K | | IRCEEKGRCPSTCHLCRRPKEQLSPTPEINRVVPLYTLIQDNGTKEAFKSACSGKGDVIDDWCRCDLSAFDANGLPNCSPLLQPVL---RLSPTVEPSSTVVSLEWVDVQPIGTKVSDYILQHKKVDLSFADDLLSGLGTSCVAAGRPEVSIYSVIFKCLE--PDGLYKFTLYAVDTRGTVTLRTACPLDDNKAEEIADKIYNLGKEQQMAYNTLMEVSA---------------------SMLFRVQHHYNSHYEKFGDFVWRSEDELGPRKAHLILRRLER |
2 | 3nuiA1 | 0.14 | 0.06 | 1.94 | 0.49 | FFAS-3D | | -------------------------------------------------------------------------------------------------VNGRRYLDANSGLWNMVAGFDGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFLEAVKDKASKTPFDGNLLGLICRPLGQSVVLCPPFILTEAQMDEMFDKL---EKALDKVFAEVAA------------------------------------------------------------------ |
3 | 2rrlA | 0.13 | 0.07 | 2.34 | 0.33 | HHpred | | -------------------------------------------------------------------------AAAATSAKVEVD----SPPAPVTH-GAAMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFSQQV-M-LFTR--QGQQSAQLRLH-----PEELGQVHISLKLDDNQAQLQMV--SPHSHVRAALE------AALPMLRTQLAESGIQLGQSSISSE------------------------------SFAGQQQSSSQQQSS-------- |
4 | 5cwqA | 0.13 | 0.11 | 3.78 | 0.59 | MUSTER | | EELERESEEAERRLQEARKRSEEARERGDLKELAEALIE--EARAVQELARVACERGNSEEAERASE---KAQRVLEEARKVSEEAREQG--DDEVLALALIAIALAVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGDD--EVLALALIAIALAVLALAEVACCRG-----------NKEEAERAYEDARRVEEEARKVKESAEEQ---------GD--------SEVKRLAEEAEQLAREARRHVQECRGGWLEHHH------------- |
5 | 4aimA | 0.14 | 0.05 | 1.82 | 0.64 | CNFpred | | -----------------------------------------------------------------------------------------------------QVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTL-------DEMKESKMDLVVAGAVMMVESEIELSEEIVLGGVNFAHQQMQAVIDAIIDLAEH----------------------------------------------------------------- |
6 | 2rrlA | 0.13 | 0.08 | 2.70 | 0.56 | HHsearch-2 | | --------------------------------------------------HMASD--DRATGPAL---TPLVVAAAATSAKVE----VDSPPAPVTHGA-AMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFSQ-QVMLFT---RQGQQSAQLRLH-----PEELGQVHISLKLDDNQAQLQMV--SPHSHVRAAL---EA---ALPMLRTQLAESGIQLGQSSISSE-------------------------SFAGQQQSSSQ-QQSSR----------- |
7 | 2tmaA | 0.11 | 0.11 | 3.79 | 0.86 | Neff-PPAS | | -MLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQK-DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER--------AEERAELSEGKCAELEETNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET--------RAEFAERSVTKLEKSIDDLEDELYAQKLKYKASEELDHALNDMTSI-- |
8 | 2rrlA | 0.12 | 0.07 | 2.50 | 0.62 | HHsearch | | --------------------------------------------------HMASD--DRATGPAL---TPLVVAAAATSKVEVDS--P---PAPVTHGA-AMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFSQQ-VMLFT---RQGQQSAQLRLH-----PEELGQVHISLKLDDNQAQLQMV--SPHSHVRAALE------AALPMLRTQLAESGIQLGQSSISSE-------------------------SFAGQQQSSSQ-QQSSR----------- |
9 | 5cwmA | 0.11 | 0.08 | 3.07 | 0.51 | SP3 | | ----------------------------------------DPEDELKRVEKLVKEAEELRQAKEKGSEEDLEK---ALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLA----KRVLELAEKQGD--PEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQ---------GDPEV----ARRAVELVKRVAELLERIAREGSEEAKERAERVREEARELQERVKEL |
10 | 3tnfB | 0.08 | 0.07 | 2.82 | 0.91 | PROSPECTOR2 | | LNIKKGEEKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMSFFNEKGEEVTHYVIGKDLGGKFYPIHKEQKILEKDGKFYLLKQGED--------WESIKDSPEKQKKAEHDFHKLQYE-----------------TPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIENNISK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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