Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | WSKEYPIANQASQSGSGNSFTISKNVQLNYNEYNDIMTDFRNQFGLSLDARVDLSVEININAGLAGESDKDMQATNTMTLEIPLLQQTMNIKPNYVNSGGDTIYKSANETADINIPLLIFGIVLLIISLVAFKILAKSLLAVTRKSEYVLALNKILKEYADIIAETHNMPDLEKYDVINVKNFNDLVDVEEELHSPILYFEVKENVECVFVIVNNATAYKF |
1 | 1yypA | 0.14 | 0.11 | 3.71 | 0.68 | SPARKS-K | | ---------------------EPPTLALRLKPYKTAIQQLRSVIRLKENTTVTFLSKITFNLYITDKSFQPKTINNSTKFYVQDISDKISMCAP-----DFNMEFSSACVHGQDIV------------------------RESENSADFGVVADLLKWIGQILVHAGPPAGVKNMINVQLKNFYQTLLNCAVTKLPCTLRIVTEHDTLLYVASRNGAVENF |
2 | 1r4qL | 0.11 | 0.09 | 3.29 | 0.66 | FFAS-3D | | -----------------KEFTLDFS---TAKTYVDSLNVIRSAIGTPLQTISSGLFAVDVRGIDPEE-----GRFNNLRLIVERNNLYYRFADFSHVTFPGTTAVTLGTSLTQSVARAMLRFVTVTAEALRFRQIQRGFRTTLDDTAEDVDLTLNWGRLSSVLPDYHGQDS-VRVGRISFGSINAILGS-----VALILNCHFPSMCPVRGITHNKILW-- |
3 | 1c7gA3 | 0.07 | 0.03 | 1.28 | 0.28 | HHpred | | -------------------------------------------------------------------------------------------------IKPGQ----YVAGNM-YFTT-TRFH----QEK--NGATFVDIVRDEKGDIDLNKLATLIKEENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATR------------------ |
4 | 1vw1A | 0.08 | 0.08 | 3.20 | 0.67 | MUSTER | | EDTLLVMFLDSYKNASMQGLYIFASKDMTPEQSNVYRDNSYQQFDTNNVRRVNNRYAEDYEIPSSSSRKDYGWGDYYLSMVYNGDIPTINYKAASSDLKIYISPKLRIIHNGYEGQKRNQCNLMNKYGKLGDKFIVYTSLGVNPNNSSNKLMFYPVSGLNQGRLLFHRDTTYPSKVEAWIPGAKRSLTNQNAAIGDDYATDSLNKKQYIFMTDSKGTATDV |
5 | 5nj5B | 0.12 | 0.09 | 3.05 | 0.60 | CNFpred | | -----------------------------RKILEEAVSTALELASGSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVY--------------HQNRKGSASSTD-----LSPQAIARTVQAALDIAR-------YTSPDPCAGVADLLAFDAP--DLDLFHPAEVSPDEAIE--LAARAEQAALQADKRITNTEGG-SHYGVKVFGNSGMLQGY |
6 | 4gzuA3 | 0.09 | 0.03 | 1.02 | 0.35 | HHsearch-2 | | WQKLWVVFTNFCLFFYKTH------------------------------------------------------QDDYPLASLPLLGYVFKLQFK-------S--HVYFFRAEKYTFERWMDVIKRAS---------------------------------------------------------------------------------------------- |
7 | 1jykA | 0.10 | 0.08 | 2.85 | 0.74 | Neff-PPAS | | -----YLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELAN--------SYVIDADNYLFKNFRNDLTRSTYFSVYREDCTNEWFLVYG-----DDYKVQDIIVDSKAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNVKDNIKELDVYVEELEG------NSIYEIDSVQDYRKLEEILK--------------------------- |
8 | 2kncB | 0.11 | 0.04 | 1.30 | 0.39 | HHsearch | | ---------------------------------------------------------------------------------------------------------GAMGSKGPDILVVLLSVMGAILLIGLAALLIWKITIHD-----RKEFAKFEEERAKWD-TANNPATSTFTNI----TYRG--------------------T--------------- |
9 | 2z6bA | 0.04 | 0.04 | 2.08 | 0.57 | SP3 | | IQDSNLDTAINPDDRPLSEIPTDDNPNMSMAEMLRRDEGLRLKVYWDTEG-YPTIGIGHLIMKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDSLWYQQTK----GRASRVTMIILTGNLESYGVEVKTPARSLLAMAATVAKSSD |
10 | 4g59C | 0.05 | 0.05 | 2.05 | 0.64 | PROSPECTOR2 | | SYMDVRIFEDERVDICQDPEMFRHSINLEFVEQERFVYEYIMNVFKAGRP-VVFEYRCKF-------------VPFECTVLQMMDGNTLTR-----YTVDKGVETLGSPPYSPDVSEDDIARYGQGSGISIL---------RDNAALLQKRWTSFCRKIVAMEYSLYSNRGNGYAYNISLAN---------GVDIYKYMRMYSGGRLKVEAWLDLRATVKY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|